BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg922968

Length=396
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G42320.1 | Symbols:  | nucleolar protein gar2-related | chr2...   132    3e-30


> AT2G42320.1 | Symbols:  | nucleolar protein gar2-related | chr2:17627962-17630797 
FORWARD LENGTH=2290
Length=2290

 Score =  132 bits (71),  Expect = 3e-30
 Identities = 122/145 (84%), Gaps = 9/145 (6%)
 Strand=Plus/Plus

Query  238   AAGTGTATAGCTCGAATT-GATGTAGCTATGTTCAACGCAATTCTGCC-TGAGTCAGAGC  295
             |||||||| | | | ||| |||||||| ||||| || || ||||| ||  || ||||| |
Sbjct  1401  AAGTGTATCGGTAG-ATTCGATGTAGCCATGTTTAATGCTATTCT-CCGCGAATCAGAAC  1458

Query  296   ATCAGATTCCCACTGATCCTGTCTCTGATCCTATTCTTGATTCCAAAGTTCTGCCT---C  352
             |||||||||| |||||||||||||||||||||||||||||||||||||||||||||   |
Sbjct  1459  ATCAGATTCCAACTGATCCTGTCTCTGATCCTATTCTTGATTCCAAAGTTCTGCCTATTC  1518

Query  353   CTTGCTGGAGATTTATGCATTAGGA  377
             || |||||||| ||| || || |||
Sbjct  1519  CT-GCTGGAGACTTAAGCTTT-GGA  1541



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18699602628


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5