BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg922977
Length=721
Score E
Sequences producing significant alignments: (Bits) Value
AT1G55928.1 | Symbols: | Coiled-coil domain-containing protein... 584 3e-166
AT2G27285.1 | Symbols: | Coiled-coil domain-containing protein... 505 3e-142
> AT1G55928.1 | Symbols: | Coiled-coil domain-containing protein
55 (DUF2040) | chr1:20917190-20918462 FORWARD LENGTH=1273
Length=1273
Score = 584 bits (316), Expect = 3e-166
Identities = 481/559 (86%), Gaps = 17/559 (3%)
Strand=Plus/Plus
Query 78 CTTCGTACTGCTCCATTATTTGGTCAAGAT---GAAGACAACGATGTGGATATGGAAATT 134
|||| || ||||||| || ||||| ||||| ||||||||||||||||| | ||| |||
Sbjct 363 CTTCCTATTGCTCCAATACTTGGTGAAGATGAAGAAGACAACGATGTGGACAAGGAGATT 422
Query 135 TCTCGACAAGCTTCAAAGACCAAGGGTCTTAAGAGAA-TTGAGGAGCAGCATAAGAAAGC 193
||||| |||||||||||||||||| |||||||| || ||||||||||||||||||||||
Sbjct 423 TCTCGTCAAGCTTCAAAGACCAAGTCTCTTAAGA-AATTTGAGGAGCAGCATAAGAAAGC 481
Query 194 CTTGGAGGAGGACCCTTGTGCTTATGCTTACGATGAAGTTTATGATCAGTTGAAAAAAGA 253
||||||||| ||||||||||||| |||||||||||||||||||||| | |||| | ||
Sbjct 482 CTTGGAGGAAGACCCTTGTGCTTTTGCTTACGATGAAGTTTATGATGACACGAAACAGGA 541
Query 254 AGCATATCTTCCACGAATGCATGATTGTGAAGAGCCCAA---GTCAAGATATGCCCAGCT 310
|||| |||||||||| | ||||| || ||||| ||| | | | |||| ||||||
Sbjct 542 AGCACCTCTTCCACGACTACATGAACGTCAAGAGTGCAATAAGCCTATATATAACCAGCT 601
Query 311 -ATTGA-GGAAACAGGCTGACCGTAGACAGAAAGAACGTGAAATAGTTTATGAAAGAAAG 368
|| || ||||| |||| ||||| ||||||||||||||||| |||||||| || ||||||
Sbjct 602 TAT-GAAGGAAA-AGGCAGACCGGAGACAGAAAGAACGTGAGATAGTTTACGAGAGAAAG 659
Query 369 CTTGCCAAAGAGAGGGCCAAAGACCAACATCTTTTTCCAGATCAAGTAAAGATTGTTACT 428
||||| |||||||| |||||||| ||||||||||||||||||||||| ||| |||| ||
Sbjct 660 CTTGCGAAAGAGAGAGCCAAAGAGCAACATCTTTTTCCAGATCAAGTTAAGGTTGTAACC 719
Query 429 GGT-GCCTATAAAAGGAAACTAGAGGAACGAGAACAATGGCTGTCACAAGAAAGATTGCT 487
||| | |||||||||||||||||||||||||| |||||||| ||| ||||||||||||
Sbjct 720 GGTAGT-TATAAAAGGAAACTAGAGGAACGAGATCAATGGCTCTCAGAAGAAAGATTGCG 778
Query 488 TGAACTTCTAGAAGAAAAAGATGATGTTACAAAGAAGACAG-ACTTGAGTGATTTCTACT 546
||||||| ||| ||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 779 TGAACTTGGAGAGGAAAAAGATGATGTTACAAAGAAGA-AGGACTTGAGTGATTTCTACT 837
Query 547 TCAACATTGGAAAAAATGTGACATTTGGAGCTCGAGATATCAATGCTAGAGAGGCAAAGA 606
|||||||||| ||||||||| | |||||||||||||||||||| ||||||||| || |||
Sbjct 838 TCAACATTGGGAAAAATGTGGCGTTTGGAGCTCGAGATATCAAAGCTAGAGAGACAGAGA 897
Query 607 GGTTCAAGGAACAAA-AAA 624
|| ||||||| |||| |||
Sbjct 898 GGCTCAAGGAGCAAAGAAA 916
> AT2G27285.1 | Symbols: | Coiled-coil domain-containing protein
55 (DUF2040) | chr2:11675960-11678118 REVERSE LENGTH=1312
Length=1312
Score = 505 bits (273), Expect = 3e-142
Identities = 497/602 (83%), Gaps = 28/602 (5%)
Strand=Plus/Plus
Query 50 GAAAAGGCAATCATCAGT-TCGACCTCCACTTCGTA-CTGCTCCATTATTTGGTCAAGAT 107
||||| ||||||||| | ||||||||||||||| | | ||| || |||||| | ||||
Sbjct 260 GAAAAAACAATCATCA-TCTCGACCTCCACTTCG-ACCCGCTTCAATATTTGATGAAGAA 317
Query 108 GAAGA-CAACGATGTGGATATGGAAATTTCTCGACAAGCTTCAAAGACCAAGGGTC-TTA 165
||||| | |||| || || | ||| |||||||| ||||| |||||||||| | || | |
Sbjct 318 GAAGATC-ACGACGTCGAGAAGGAGATTTCTCGTCAAGCAACAAAGACCAAAGCTCATAA 376
Query 166 AGAGAATTGAGGAGCAGCATAAGAAAGCCTTGGAGGAGGACCCTTGTGCTTATGCTTACG 225
||| ||||||||||||||||||||||||||| |||||||| |||| ||||| | | || |
Sbjct 377 AGA-AATTGAGGAGCAGCATAAGAAAGCCTTAGAGGAGGATCCTTCTGCTTTTTCATATG 435
Query 226 ATGAAGTTTATGATCAGT-TGAAAAAAG-AAGCAT-ATCTTCCACGAATGCATGATTGTG 282
|||||||||||||| | | || ||| || |||| | |||||| |||||||| ||| |||
Sbjct 436 ATGAAGTTTATGATGA-TATG-AAACAGAAAGC-TGTTCTTCCTCGAATGCAAGATCGTG 492
Query 283 AAGAGCCCAAGTCAAGATATGCCCAGCTA-TTGAGGAAACAGGCTGACCGTAGACAGAAA 341
|||| | |||| |||| ||| ||| | |||| ||||||||| || |||||| |||||
Sbjct 493 AAGAACGCAAGCCAAGGTATATACAG-AATTTGATGAAACAGGCAGAACGTAGAGAGAAA 551
Query 342 GAACGTGAAATAGTTTATGAAAGAAAGCTTGCCAAAGAGAGGGCCAAAGACCAACATCTT 401
|||| ||| ||||||||||| ||||||||||| |||||||||| |||||| ||||||||
Sbjct 552 GAACATGAGATAGTTTATGAGAGAAAGCTTGCGAAAGAGAGGGAGAAAGACGAACATCTT 611
Query 402 TTTCCAGATCAAGTAAAGATTGTTACTGGTGCCTATAAAAGGAAACTAGAGGAACGAGAA 461
||| | ||| ||| |||| |||||||||| || |||||||||||||| ||||||| | ||
Sbjct 612 TTTTCGGATAAAGAAAAGTTTGTTACTGGCGCTTATAAAAGGAAACTTGAGGAAC-AAAA 670
Query 462 -CAATGGCTGTCACAAGAAAGATTGCTTGAACTTC-TAGAAGAAAAAGATGATGTTACAA 519
|||||||| || |||||||||||| |||||||| | || |||| |||||||||||| |
Sbjct 671 GAAATGGCTGGCAGAAGAAAGATTGCGTGAACTTCGT-GAGGAAAGAGATGATGTTACTA 729
Query 520 AGAAGACAGACTTGAGTGATTTCTACTTCAACATTGGAAAAAATGT-GACATTTGGAGCT 578
|||||| ||| ||||||||||||||||||||||||||||||||||| | | |||||||||
Sbjct 730 AGAAGAAAGATTTGAGTGATTTCTACTTCAACATTGGAAAAAATGTCG-CTTTTGGAGCT 788
Query 579 CGAGATA-TC-AATGCTAGAGAGGCAAAGAGGTTCAAGGAACAAA-AAAGACGAGAGGAG 635
||||| | || || |||| ||||||| ||| | || ||||||||| |||| | |||| ||
Sbjct 789 CGAGA-AGTCGAA-GCTAAAGAGGCAGAGAAGCTCGAGGAACAAAGAAAGGC-AGAGAAG 845
Query 636 CT 637
||
Sbjct 846 CT 847
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34962966312
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5