BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg922978
Length=471
Score E
Sequences producing significant alignments: (Bits) Value
AT2G44180.1 | Symbols: MAP2A | methionine aminopeptidase 2A | c... 383 9e-106
AT3G59990.1 | Symbols: MAP2B | methionine aminopeptidase 2B | c... 254 7e-67
> AT2G44180.1 | Symbols: MAP2A | methionine aminopeptidase 2A |
chr2:18269243-18271860 REVERSE LENGTH=1600
Length=1600
Score = 383 bits (207), Expect = 9e-106
Identities = 222/229 (97%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 32 GAAGAAGAAGAGTATC-CTTCAACAGACTGATCCTCCTTCAATTCCTGTTCTTGAGCTCT 90
||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 291 GAAGAAGAAGAGT-TCTCTTCAACAGACTGATCCTCCTTCAATTCCTGTTCTTGAGCTCT 349
Query 91 TCCCTTCTGGAGATTTTCCTGAAGCTGAAATCCAACAGTACAAGGATGATAATTTGTGGA 150
|||||||||||||||||||| ||| |||||||||||||||||| ||||||||||||||||
Sbjct 350 TCCCTTCTGGAGATTTTCCTCAAGGTGAAATCCAACAGTACAATGATGATAATTTGTGGA 409
Query 151 GAACAACATCTGAAGAGAAGAGAGAGATGGAGCGGCTGCAAAAGCCGATATATAACTCTC 210
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 410 GAACAACATCTGAAGAGAAGAGAGAGATGGAGAGGCTGCAAAAGCCGATATATAACTCTC 469
Query 211 TTCGCCAAGCAGCAGAAGTTCATCGTCAAGTTAGGAAGTATATGAGAAG 259
||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 470 TTCGCCAAGCAGCGGAAGTTCATCGTCAAGTTAGGAAGTATATGAGAAG 518
Score = 292 bits (158), Expect = 2e-78
Identities = 170/176 (97%), Gaps = 0/176 (0%)
Strand=Plus/Plus
Query 296 CTTGATGGCTTTAAAGAATCTTTGTGATTCTGGCATTATTGAGCCATGTCCTCCAGTGTG 355
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1248 CTTGATGGCTTTAAAGAATCTTTGTGATTCTGGCATAATTGAGCCATGTCCTCCAGTGTG 1307
Query 356 TGATGTGAAAGGAAGCTATATTTCTCAGTTTGAGCATACAATCTTATTACGACCAACTTG 415
|||||| |||||||||||||||||||||||||||||||||||| | || |||||||||||
Sbjct 1308 TGATGTCAAAGGAAGCTATATTTCTCAGTTTGAGCATACAATCCTGTTGCGACCAACTTG 1367
Query 416 CAAAGAGATTATTTCCAAAGGAGACGATTATTGAAATGGTGATTTTCACAGAACTT 471
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1368 CAAAGAGATTATTTCCAAAGGAGACGATTATTGAAATAGTGATTTTCACAGAACTT 1423
> AT3G59990.1 | Symbols: MAP2B | methionine aminopeptidase 2B |
chr3:22155719-22158730 REVERSE LENGTH=1621
Length=1621
Score = 254 bits (137), Expect = 7e-67
Identities = 203/234 (87%), Gaps = 8/234 (3%)
Strand=Plus/Plus
Query 32 GAAGAAGAAGAGTA-TCCTTCAACAGACTGATCCTCCTTCAATTCCTGTTC-TTGAGCTC 89
|||||||||| | | ||| ||||||||||||||| ||||||||||||| || ||||||||
Sbjct 309 GAAGAAGAAG-GAACTCCCTCAACAGACTGATCCACCTTCAATTCCTG-TCGTTGAGCTC 366
Query 90 TTCCCTTCTGGAGATTTTCCTGAAGCTGAAATCCAACAGTACAAGGATGATAAT-TTGTG 148
||||| || ||||| |||||||||| |||||||||| |||| |||||||||||| || ||
Sbjct 367 TTCCCATCAGGAGAGTTTCCTGAAGGTGAAATCCAAGAGTATAAGGATGATAATCTT-TG 425
Query 149 GAGAACAACATCTGAAGAGAAGAGAGAGATGGAGCGGCT-GCAAAAGCCGATATATAACT 207
|||||||||||||||||||||||||||| ||||||| | | ||||||| ||||||||||
Sbjct 426 GAGAACAACATCTGAAGAGAAGAGAGAGCTGGAGCGTTTTG-AAAAGCCAATATATAACT 484
Query 208 CTCTTCGCCAAGCAGCAGAAGTTCATCGTCAAGTTAGGAAGTATATGAGAAGCA 261
|| |||||| ||| |||||||||||||| || ||| | || ||| | |||||||
Sbjct 485 CTGTTCGCCGAGCTGCAGAAGTTCATCGCCAGGTTCGTAAATATGTCAGAAGCA 538
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22404429562
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5