BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg922987
Length=739
Score E
Sequences producing significant alignments: (Bits) Value
AT1G22015.1 | Symbols: DD46 | Galactosyltransferase family prot... 1094 0.0
> AT1G22015.1 | Symbols: DD46 | Galactosyltransferase family protein
| chr1:7751002-7753519 REVERSE LENGTH=1514
Length=1514
Score = 1094 bits (592), Expect = 0.0
Identities = 665/701 (95%), Gaps = 2/701 (0%)
Strand=Plus/Plus
Query 1 AAGTCTCCAAGAGACTAACTATGACATGGGTTCCTATTCTTTGCATTTCTTGCTTTTTCC 60
|||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||
Sbjct 111 AAGTCTCCAAGAGACTTACTATGACATGGGTTCCTCTTCTTTGCATTTCTTGCTTTTTCC 170
Query 61 TCGGAGCAATCTTCACCTCCAAATTGCGATCAGCGTCTTCGGATTCCGGTAGCCAGCTCA 120
||||||||||||||||||||||||| |||||||| || ||||||||||||||||||||||
Sbjct 171 TCGGAGCAATCTTCACCTCCAAATTACGATCAGCTTCGTCGGATTCCGGTAGCCAGCTCA 230
Query 121 TTTTACAGCACCGGTGTGATCAGGAAG-TTAAGATTGTTACCCAAGATTATGCTCATGAG 179
|||||||||||||| ||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 231 TTTTACAGCACCGGCGTGATCAGG-AGCTTAAGATTGTTACCCAAGATTATGCTCATGAG 289
Query 180 aaaaaaaaaTCAGAAGACAAAGATGTAATGGAAGAGGTTTTAAAAACCCATAAAGCAATC 239
||||| |||||| ||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 290 AAAAAGAAATCACAAGACAATGATGTAATGGAAGAGGTTTTAAAAACTCATAAAGCAATC 349
Query 240 GAATCATTGGATAAGTCAGTTTCTATGCTTCAGAAGCAGCTCTCTACTACACATAGCTCA 299
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 350 GAATCATTGGATAAGTCAGTTTCTATGCTTCAGAAGCAGCTCTCTGCTACACATAGCCCT 409
Query 300 CAACAGATTCTGGATGCCACATCAACCAATTCTTCAACAGAAGGAAACCAAAGGAAGAAA 359
||||||||| || ||| | || |||||||||||||||||||||||||||||| ||| |||
Sbjct 410 CAACAGATTGTGAATGTCTCAGCAACCAATTCTTCAACAGAAGGAAACCAAAAGAACAAA 469
Query 360 GTTTTCATGGTTATTGGTATCAATACTGCATTTAGTAGTAGAAAACGTCGTAATTCGCTT 419
||||| ||||| ||||||||||||||||||||||| ||| |||||||||| ||||||||
Sbjct 470 GTTTTTATGGTGATTGGTATCAATACTGCATTTAGCAGTCGAAAACGTCGCGATTCGCTT 529
Query 420 AGAGAGACTTGGATGCCTCAGGGGGAAAAGCTTGAGAAATTAGAAAAAGAGAAAGGAATT 479
|||||||||||||||||||| |||||||||||||||||||| ||||||||||| ||||||
Sbjct 530 AGAGAGACTTGGATGCCTCAAGGGGAAAAGCTTGAGAAATTGGAAAAAGAGAAGGGAATT 589
Query 480 GTCATCAAATTTATGATTGGACACAGTTCAACGCCAAACAGTATATTGGATAAGGAAATT 539
||| |||||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 590 GTCGTCAAATTTATGATTGGACACAGTTCAACGCCAAACAGTATGTTGGATAAGGAGATT 649
Query 540 GATTCAGAAGATGCTCAATACAAAGATTTCTTTAGGCTGGATCATGTCGAAGGATATTAC 599
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 650 GATTCAGAAGATGCTCAATACAACGATTTCTTTAGGCTGGATCATGTCGAAGGATATTAC 709
Query 600 AATCTATCTGCAAAAACCAAAAGCTTCTTTTCTAGTGCAGTTGCAAAGTGGGATGCTGAG 659
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 710 AATCTATCTGCAAAAACCAAAAGCTTCTTCTCTAGTGCAGTTGCAAAGTGGGATGCTGAG 769
Query 660 TTTTATGTCAAGATTGATGATGATGTTCACGTCAATCTTGG 700
|||||||||||||||||||||||||||||||||||||||||
Sbjct 770 TTTTATGTCAAGATTGATGATGATGTTCACGTCAATCTTGG 810
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35867180958
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5