BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg922988
Length=295
Score E
Sequences producing significant alignments: (Bits) Value
AT1G22020.1 | Symbols: SHM6 | serine hydroxymethyltransferase 6... 462 7e-130
> AT1G22020.1 | Symbols: SHM6 | serine hydroxymethyltransferase
6 | chr1:7754321-7757383 FORWARD LENGTH=2374
Length=2374
Score = 462 bits (250), Expect = 7e-130
Identities = 260/265 (98%), Gaps = 0/265 (0%)
Strand=Plus/Plus
Query 1 ACAAATGTGGAGCTGTTTTGATGTTTGACATGGCACAGATTAGCGGTCTTGTCGCTGCCA 60
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1285 ACAAATGTGGAGCTGTTTTGATGTTTGACATGGCACAGATTAGTGGTCTTGTCGCTGCCA 1344
Query 61 AGGAAAGTCCAAATCCATTCGATTATTGTGATATTGTTACCTCAACAACACACAAGTCTC 120
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1345 AGGAAAGTCCAAATCCATTCGATTATTGCGATATTGTTACCTCAACAACACACAAGTCTC 1404
Query 121 TCCGTGGACCTAGGGGCGGCATCATATTTTACAGGAGAGGCTTGAAGCCCAAGAAGCAAA 180
||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1405 TCCGTGGCCCTAGGGGCGGCATCATATTTTACAAGAGAGGCTTGAAGCCCAAGAAGCAAA 1464
Query 181 GCATGAATCTTAATCACTGTGAGAGCAATATCCAGTATGATTTTGAAGAAAAAATCAACT 240
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1465 GCATAAATCTTAATCACTGTGAGAGCAATATCCAGTATGATTTTGAAGAAAAAATCAACT 1524
Query 241 TTTCTGTCTTTCCATCGTTGCAAGG 265
|||||||||||||||||||||||||
Sbjct 1525 TTTCTGTCTTTCCATCGTTGCAAGG 1549
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 13622559979
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5