BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg922992
Length=799
Score E
Sequences producing significant alignments: (Bits) Value
AT1G46480.1 | Symbols: WOX4 | WUSCHEL related homeobox 4 | chr1... 1254 0.0
> AT1G46480.1 | Symbols: WOX4 | WUSCHEL related homeobox 4 | chr1:17236678-17238053
REVERSE LENGTH=1081
Length=1081
Score = 1254 bits (679), Expect = 0.0
Identities = 759/799 (95%), Gaps = 0/799 (0%)
Strand=Plus/Plus
Query 1 TTTGCTAATTAAAACATATAGCAATGAAGGTTCATGAGTTTTCTAATGGATTTTCTTCTT 60
||||||| || ||||||||||||||||||||||||||||||| ||||| |||||||| |
Sbjct 78 TTTGCTAGTTTTAACATATAGCAATGAAGGTTCATGAGTTTTCGAATGGGTTTTCTTCAT 137
Query 61 CGTGGGATCAACATGACTCGGCATCATCCCTTAGCCTAAGCTGCAAACGCCTCCGTCCTC 120
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 138 CGTGGGATCAACATGACTCGACATCATCCCTTAGCCTAAGCTGCAAACGCCTCCGTCCTC 197
Query 121 TCGCCCCGAAGCTTTCCGGCAGCCCTCCCTCCCCTCCTTCTTCTTCCTCTGGCGTCACTT 180
||||||| ||||| ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 198 TCGCCCCTAAGCTCTCCGGCAGCCCTCCCTCCCCTCCTTCTTCTTCCTCCGGCGTCACTT 257
Query 181 CCGCCACTTTTGACCTCAAAAGCTTCATTAGACCTGATCTAATCGGTCCGACAAAATTTG 240
| |||||||||||||| |||| |||||||||||| |||| || |||||||||||||||||
Sbjct 258 CAGCCACTTTTGACCTTAAAAACTTCATTAGACCCGATCAAACCGGTCCGACAAAATTTG 317
Query 241 AACACAAACGAGACCCTCCTCATCAATTGGAGACGCACCCGGGAGGGACAAGGTGGAACC 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 318 AACACAAACGAGACCCTCCTCATCAATTGGAGACGCACCCGGGAGGGACAAGGTGGAACC 377
Query 301 CGACTCAAGAACAGATAGGGATACTTGAGATGTTGTACAAAGGTGGAATGCGTACTCCTA 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 378 CGACTCAAGAACAGATAGGGATACTTGAGATGTTGTACAAAGGTGGAATGCGTACTCCTA 437
Query 361 ACGCTCAACAGATCGAGCATATCACATCGCAACTCGGCAAGTACGGGAAAATCGAAGGGA 420
| ||||||||||| ||||||||||||| ||||||||| ||||||||||||||||||||||
Sbjct 438 ATGCTCAACAGATTGAGCATATCACATTGCAACTCGGTAAGTACGGGAAAATCGAAGGGA 497
Query 421 AGAATGTGTTTTACTGGTTCCAGAACCACAAAGCCCGCGAGAGACAGAAGCAGAAGAGGA 480
| |||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 498 AAAATGTGTTCTATTGGTTCCAGAACCACAAAGCCCGCGAGAGACAGAAGCAGAAGAGGA 557
Query 481 ACAACCTCATCAGCCTAAGTTGCCAAAGCAGCTTCACGACCACTGGTATCTCTAACCCGA 540
||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| ||||
Sbjct 558 ACAACCTCATCAGCCTAAGTTGCCAAAGCAGCTTCACGACCACTGGTGTCTTTAATCCGA 617
Query 541 GTGTAGCAACGAAGACAAGAACTTCATCGTCACTAGACATCAGGAGAGAATTAATGGTGG 600
||||| | | |||||||||||| ||||||||||||||||| | ||||||| ||||||||
Sbjct 618 GTGTAACTATGAAGACAAGAACATCATCGTCACTAGACATTATGAGAGAACCAATGGTGG 677
Query 601 AGAAGGAGGAGTTAGTGGAAGAGAATGAGTACAAGAGGACATGTAGGAGCTGGGGATTTG 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 678 AGAAGGAGGAGTTAGTGGAAGAGAATGAGTACAAGAGGACATGTAGGAGCTGGGGATTTG 737
Query 661 AGAACTTGGAGATAGAGAACAGAAGAAACAAAAATAGTAGTACTATGGCAACTACTATTA 720
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||
Sbjct 738 AGAACTTGGAGATAGAGAACAGGAGAAACAAAAATAGTAGTACTATGGCAACTACTTTTA 797
Query 721 ATAAAATCATTGACAATGTAACCCTCGAGCTTTTTCCTCTGCACCCTGAAGGTAGATGAA 780
|||||||||||||||||||||||||||||||||||||||| || |||||||| |||||||
Sbjct 798 ATAAAATCATTGACAATGTAACCCTCGAGCTTTTTCCTCTCCATCCTGAAGGGAGATGAA 857
Query 781 GTCATGAAGATGAGGCAGA 799
||||||||| |||||||||
Sbjct 858 GTCATGAAGGTGAGGCAGA 876
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38881229778
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5