BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg922996
Length=1603
Score E
Sequences producing significant alignments: (Bits) Value
AT1G47056.1 | Symbols: VFB1 | VIER F-box proteine 1 | chr1:1727... 2416 0.0
> AT1G47056.1 | Symbols: VFB1 | VIER F-box proteine 1 | chr1:17276103-17277659
REVERSE LENGTH=1557
Length=1557
Score = 2416 bits (1308), Expect = 0.0
Identities = 1484/1568 (95%), Gaps = 16/1568 (1%)
Strand=Plus/Plus
Query 21 ATGGGCCAATCAACCTCCGCCGCCGGTAATTCCATCCTCAATCGACGACGAAGCAAATCG 80
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1 ATGGGCCAATCAACCTCCGCCGCCGGAAATTCCATCCTCAATCGACGACGAAGCAAATCG 60
Query 81 TTTTCTCTGAAATTTCCGATGGAATCGATAATCGAATCTGAGATTTCTCAACCTGACTAC 140
||| | |||||||| ||||| ||||| |||||||||||||||||| ||||||||||||
Sbjct 61 TTTACACTGAAATTCCCGATTGAATC---AATCGAATCTGAGATTTCACAACCTGACTAC 117
Query 141 ACATCGTGTTTACCTGACGAGTGCTTAGCTTTGGTGTTCCAGTTCTTAAACTCCGGTAAT 200
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 118 ACATCGAGTTTACCTGACGAGTGCTTAGCTTTGGTGTTCCAGTTCTTAAACTCCGGTAAT 177
Query 201 CGGAAAAGATGTGCTTTGGTTTGTCGACGGTGGATGATCGTTGAAGGACAGAATCGTTAC 260
||||||||||||||| |||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 178 CGGAAAAGATGTGCTCTGGTTTGTCGTCGGTGGATGATCGTCGAAGGACAGAATCGTTAC 237
Query 261 CGTCTTTCTCTCCACGCTCGTTCTGATCTGATTACTTCGATTCCTTCTATCTTCTCTCGA 320
|||||||||||||||||||| || |||||||||||||||||||||||| |||||||||||
Sbjct 238 CGTCTTTCTCTCCACGCTCGCTCAGATCTGATTACTTCGATTCCTTCTCTCTTCTCTCGA 297
Query 321 TTCGATTCCGTTACTAAGCTTTCGTTGAAATGCGATCGTAGATCTGTGAGTATCGGCGAC 380
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 298 TTCGATTCCGTTACTAAGCTTTCGTTGAAATGCGATCGTAGATCTGTTAGTATCGGCGAC 357
Query 381 GAAGCGCTTGTTAAAATCTCTCTCCGGTGTCGGAATTTGAAGAGACTTAAGCTTAGAGCT 440
|||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 358 GAAGCGCTTGTTAAGATCTCTCTCCGGTGTAGGAATTTGAAGAGACTTAAGCTTAGAGCT 417
Query 441 TGCCGTGAGCTTACCGATGTAGGTATGGCTGCTTTTGCTGAGAATTGTAAAGATTTGAAG 500
||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 418 TGCCGTGAGCTCACCGATGTAGGTATGGCTGCTTTTGCTGAGAATTGTAAGGATTTGAAG 477
Query 501 ATTTTCTCTTGTGGATCTTGTGATTTTGGAGCTAAAGGTGTGAAAGCTGTGCTTGATCAT 560
|| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 478 ATATTCTCTTGTGGTTCTTGTGATTTTGGAGCTAAAGGTGTGAAAGCTGTGCTTGATCAT 537
Query 561 TGCTCGAATCTCGAGGAGTTATCGATTAAGCGGCTCCGTGGATTCACCGATATAGCTCCG 620
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 538 TGCTCGAATCTCGAGGAGTTATCGATTAAGCGTCTCCGTGGATTCACCGATATAGCTCCG 597
Query 621 GAGTTGATTGGTCCTGGTGTTGCTGCTTCGTCTCTTAAGTCGATTTGCTTGAAGGAGCTT 680
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 598 GAGATGATTGGTCCTGGTGTTGCTGCTTCGTCTCTTAAGTCGATTTGCTTGAAGGAGCTT 657
Query 681 TATAATGGTCAATGTTTCGGTCCGGTGATTGTTGGTGCGAAGAATCTTAGGTCTTTGAAG 740
||||||||||| ||||||||||| ||||| ||||||||||||||||||| |||| |||||
Sbjct 658 TATAATGGTCAGTGTTTCGGTCCTGTGATCGTTGGTGCGAAGAATCTTAAGTCTCTGAAG 717
Query 741 CTTTTTAGGTGTTCTGGTGACTGGGACTTGCTT-TTACAAGAGATGGCTGTTAAGGATCA 799
|||||||||||||||||||| |||||||||||| || ||||||||| ||| |||||||||
Sbjct 718 CTTTTTAGGTGTTCTGGTGATTGGGACTTGCTTCTT-CAAGAGATGTCTGGTAAGGATCA 776
Query 800 TGGTATAGTGGAGATACATTTGGAACGGATGCAAGTGAGCGATGTAGCTCTTA-CTGCGA 858
|||| |||||||||||||||||||||| |||||||| || ||||||||| ||| ||||||
Sbjct 777 TGGTGTAGTGGAGATACATTTGGAACGTATGCAAGTTAGTGATGTAGCT-TTATCTGCGA 835
Query 859 TATCGAATTGCTCGAGTCTCGAGATTTTGCATCTTGTGAAGACACCGGAATGCACGAATT 918
||||| |||||||||||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct 836 TATCGTATTGCTCGAGTCTCGAGAGTTTGCATCTTGTGAAGACACCTGAATGCACGAATT 895
Query 919 TCGGATTAGCTGCGATTGCAGAGAAGTGTAAGCATTTGAGAAAGCTTCATATCGATGGAT 978
|||||||||||||||||||||||||||| |||| |||||| ||||||||||| |||||||
Sbjct 896 TCGGATTAGCTGCGATTGCAGAGAAGTGCAAGCGTTTGAGGAAGCTTCATATTGATGGAT 955
Query 979 GGAAAGCGAATTTGATTGGGGACGAAGGGCTTGTGGCTGTGGCTAGGTTTTGTTCTCAGT 1038
||||||||||||||||||| || |||||||||||||||||||||| ||||||||||||||
Sbjct 956 GGAAAGCGAATTTGATTGGTGATGAAGGGCTTGTGGCTGTGGCTAAGTTTTGTTCTCAGT 1015
Query 1039 TACAGGAATTAGTACTGATTGGAGTGAATCCGACGACGCTAAGTTTAGGAATGTTGGCTG 1098
|||||||| | |||||||||||||||||||| ||||| || |||||||||||||||||||
Sbjct 1016 TACAGGAACTGGTACTGATTGGAGTGAATCCAACGACACTTAGTTTAGGAATGTTGGCTG 1075
Query 1099 CGAAATGTCTGAATCTTGAAAGATTGGCACTTTGTGGTTGTGATACGTTTGGTGATCCTG 1158
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1076 CGAAATGTTTGAATCTTGAAAGATTGGCACTTTGTGGTTGTGATACGTTTGGTGATCCTG 1135
Query 1159 AGCTTTCTTGTATTGCAGCGAAATGTCCGGCTTTAAGGAAATTATGTATCAAGAACTGTC 1218
||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1136 AGCTTTCTTGTATCGCAGCGAAATGTCCGGCTTTAAGGAAATTGTGTATCAAGAACTGTC 1195
Query 1219 CAATTTCGGATGTGGGAATCGAGAATCTTGCAAACGGATGCCCAGGTTTAACCAAAGTGA 1278
| |||||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 1196 CGATTTCGGATGTGGGAATCGAGAATCTTGCAAACGGATGTCCTGGTTTAACCAAAGTGA 1255
Query 1279 AAATCAAGAAATGCAAAGGAGT-TCTGGGCGGGTGCGCTGACTGGTTAAGAACGGTTAGG 1337
|||||||||| ||||||||||| | |||| |||||||| |||||||||||||| ||||||
Sbjct 1256 AAATCAAGAAGTGCAAAGGAGTAT-TGGGAGGGTGCGCAGACTGGTTAAGAACAGTTAGG 1314
Query 1338 CCTATGCTTTCGGTGAACGCAGACACCGTGGAACCAGAACATCAAGAAGAAGCAAGCAAT 1397
||||||||||||||||||||||||||| |||||| ||||||| |||||| ||||||||||
Sbjct 1315 CCTATGCTTTCGGTGAACGCAGACACCATGGAACAAGAACATGAAGAAGCAGCAAGCAAT 1374
Query 1398 GATGCTT-TAGGAGGATTGCAAGAAAACGGAATCGAATTCCCTCAATTGAACAGCCAGAT 1456
|||| || ||||||||| |||||||||||||||||||||||||||||||||||| |||||
Sbjct 1375 GATG-TTGTAGGAGGATCGCAAGAAAACGGAATCGAATTCCCTCAATTGAACAGTCAGAT 1433
Query 1457 CATGGCACCAAGCATTGCATCAAGCAGTAGAAGAAGCCGGTCAGGGTATTTCAAATCAGG 1516
||||||| |||||||||||||||| ||||||| | ||||||||||||||||||||||||
Sbjct 1434 CATGGCATCAAGCATTGCATCAAGTAGTAGAA-A--CCGGTCAGGGTATTTCAAATCAGG 1490
Query 1517 CATTGGACTGTTCAGCGGAATGAGTCTAGTAGC-TTGCACTTCGAGACAACGACGGGCAA 1575
||||||| |||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 1491 CATTGGATTGTTCAGCGGAATGAGTCTAGT-GCCTTGCACTTCGAGACAACGACGGGCAA 1549
Query 1576 GCAGGTGA 1583
||||||||
Sbjct 1550 GCAGGTGA 1557
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79166259465
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5