BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg923004

Length=893
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G16143.1 | Symbols: IMPA-2 | importin alpha isoform 2 | chr4...   523    1e-147


> AT4G16143.1 | Symbols: IMPA-2 | importin alpha isoform 2 | chr4:9133937-9137353 
REVERSE LENGTH=2217
Length=2217

 Score =  523 bits (283),  Expect = 1e-147
 Identities = 312/326 (96%), Gaps = 1/326 (0%)
 Strand=Plus/Plus

Query  338  AGAA-TTGGAGAGTTTGCCTTCAATGGTTGGTGGTGTTTGGTCAGATGATAGAAGTTTAC  396
            |||| ||||||||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct  440  AGAAGTTGGAGAGTTTGCCTGCTATGGTTGGTGGTGTTTGGTCAGATGATAGAAGTTTAC  499

Query  397  AGCTTGAAGCAACTACTCAGTTCCGGAAGTTGCTTTCTATTGAGCGTAGTCCTCCGATTG  456
            |||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct  500  AGCTTGAAGCGACTACTCAGTTCCGGAAATTGCTTTCTATTGAGCGTAGTCCTCCGATTG  559

Query  457  AAGAGGTGATTCAAGCTGGTGTTGTGCCTCGGTTTGTGGAATTTCTCACGAGAGAGGATT  516
            |||| |||||| | ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct  560  AAGAAGTGATTGATGCTGGTGTTGTGCCTCGGTTTGTGGAATTTCTCACTAGAGAGGATT  619

Query  517  ATCCACAGCTTCAGTTTGAGGCTGCTTGGGCATTGACGAACATTGCTTCTGGGACTTCAG  576
            ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct  620  ATCCACAGCTTCAGTTTGAGGCTGCTTGGGCATTGACAAACATTGCTTCTGGGACTTCAG  679

Query  577  AGAACACAAAGGTGGTCATTGAACATGGTGCTGTTCCGATTTTTGTTCAACTCTTGGCTT  636
            |||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct  680  AGAATACAAAGGTGGTCATTGAACATGGTGCTGTTCCGATTTTTGTTCAACTATTGGCTT  739

Query  637  CTTAGAGTGATGATGTTCGTGAGCAG  662
            || ||||||||||||| |||||||||
Sbjct  740  CTCAGAGTGATGATGTCCGTGAGCAG  765


 Score =  141 bits (76),  Expect = 1e-32
 Identities = 101/112 (90%), Gaps = 6/112 (5%)
 Strand=Plus/Plus

Query  228  ACTGAGGTTCGTCGGAACCGCTACAAAGTAGCGGTGGATGCAGAAGAAGGAAGACGGAGG  287
            ||||||||||| ||||||||||||||||| ||||||||||| || |||||||||||||||
Sbjct  244  ACTGAGGTTCGCCGGAACCGCTACAAAGTGGCGGTGGATGCTGAGGAAGGAAGACGGAGG  303

Query  288  AGAGAGGACAACATGGTTGAGA-----AA-AGTAAGCGTGAAGAAAGCTTAC  333
            ||||||||||||||||| ||||     || ||||||||||||||||||||||
Sbjct  304  AGAGAGGACAACATGGTCGAGATCCGTAAGAGTAAGCGTGAAGAAAGCTTAC  355



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 43603239596


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5