BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg923008
Length=1640
Score E
Sequences producing significant alignments: (Bits) Value
AT1G47240.1 | Symbols: NRAMP2, ATNRAMP2 | NRAMP metal ion trans... 2604 0.0
AT2G23150.1 | Symbols: NRAMP3, ATNRAMP3 | natural resistance-as... 678 0.0
> AT1G47240.1 | Symbols: NRAMP2, ATNRAMP2 | NRAMP metal ion transporter
2 | chr1:17308803-17311397 REVERSE LENGTH=1922
Length=1922
Score = 2604 bits (1410), Expect = 0.0
Identities = 1571/1647 (95%), Gaps = 17/1647 (1%)
Strand=Plus/Plus
Query 1 CGAATATTCCCTCTCCCTCAATGGAAAACGACGTCAAGGAGAAGCTTgaagaagaagaag 60
|||||||||||||| |||| ||||||||||||||||| ||||| | | ||||||| ||
Sbjct 70 CGAATATTCCCTCTTCCTCCATGGAAAACGACGTCAAAGAGAATC-T--CGAAGAAG-AG 125
Query 61 aagaagCTAACCGTCTTCTTCCTCCTCCTCATCC-T--CAATCTCTCCCTTCCTCCGATT 117
|||| ||||||||||||||||||||| ||| | ||||||||||| ||| ||||||
Sbjct 126 --GAAG---ACCGTCTTCTTCCTCCTCCTCCTCCTTCACAATCTCTCCCATCCACCGATT 180
Query 118 CCGAATCCGAAGCCGCTTTCGAATCAAACGAAAAGATCCTAATCGTCGATTTCGAATCTC 177
||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||| |
Sbjct 181 CCGAATCCGAAGCGGCTTTCGAAACAAACGAAAAGATCCTAATCGTCGATTTCGAATCAC 240
Query 178 CCGACGATCCAACAACCGGAGACTCACCACCGCCATTCTCGTGGCGGAAACTATGGTTAT 237
||||||||||||||||||||||| |||||||||||||||| |||||||| || |||||||
Sbjct 241 CCGACGATCCAACAACCGGAGACACACCACCGCCATTCTCATGGCGGAAGCTCTGGTTAT 300
Query 238 TCACCGGTCCAGGTTTCTTAATGAGTATAGCGTTTTTGGATCCAGGGAATTTAGAAGGAG 297
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 301 TCACCGGTCCAGGTTTCTTAATGAGTATAGCGTTTTTGGATCCAGGGAATCTAGAAGGAG 360
Query 298 ATCTACAAGCTGGTGCAATCGCTGGCTATTCTCTGTTATGGCTATTGATGTGGGCAACAG 357
||||||||||||||||||||||||||||||||||||| |||||| | |||||||||||||
Sbjct 361 ATCTACAAGCTGGTGCAATCGCTGGCTATTCTCTGTTGTGGCTACTAATGTGGGCAACAG 420
Query 358 CTATGGGATTGTTGATTCAGATGTTATCAGCTAGAGTTGGTGTTGCTACTGGTCGTCATT 417
||||||| ||||||||||||||||| ||||||||||| ||||| ||||||||||||||||
Sbjct 421 CTATGGGGTTGTTGATTCAGATGTTGTCAGCTAGAGTCGGTGTAGCTACTGGTCGTCATT 480
Query 418 TAGCTGAGCTTTGTCGTGATGAGTATCCGACTTGGGCTAGGTATGTGCTTTGGTCTATGG 477
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 481 TAGCTGAGCTTTGTCGTGATGAGTATCCTACTTGGGCTAGGTATGTGCTTTGGTCTATGG 540
Query 478 CGGAACTTGCTTTGATTGGTGCTGATATTCAAGAGGTTATTGGTAGTGCTATTGCTATTC 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 CGGAACTTGCTTTGATTGGTGCTGATATTCAAGAGGTTATTGGTAGTGCTATTGCTATTC 600
Query 538 AGATTCTTAGCCGTGG-TGTCTTGCCTCTTTGGGCTGGTGTTGTTATTACGGCTTCGGAT 596
|||||||||||||||| | ||||||||||||||||||||||||||||||| ||||| |||
Sbjct 601 AGATTCTTAGCCGTGGCT-TCTTGCCTCTTTGGGCTGGTGTTGTTATTACTGCTTCCGAT 659
Query 597 TGttttttatttttGTTTCTAGAGAATTACGGTGTGAGGAAGTTAGAAGCTGTTTTTGCA 656
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 TGTTTTTTATTTTTGTTTCTAGAGAATTACGGTGTGAGGAAGTTAGAAGCTGTTTTTGCA 719
Query 657 GTTTTGATCGCAACTATGGGTTTGTCCTTTGCTTGGATGTTTGGTGAAACCAAGCCGAGT 716
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 720 GTTTTGATCGCAACTATGGGTTTGTCCTTTGCTTGGATGTTTGGTGAAACAAAACCGAGT 779
Query 717 GGGAAAGAACTTATGATAGGTATTTTACTACCGAGGCTTAGCTCGAAGACAATTAGACAA 776
||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| |||
Sbjct 780 GGGAAAGAACTTATGATAGGTATTTTACTACCGAGACTTAGCTCAAAGACAATTAGGCAA 839
Query 777 GCAGTAGGTGTTGTTGGCTGTGTCATAATGCCTCACAATGTGTTTTTGCATTCGGCTCTT 836
|| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 840 GCTGTAGGTGTTGTTGGCTGTGTTATAATGCCTCACAATGTGTTTTTGCATTCGGCTCTT 899
Query 837 GTACAATCGAGGAAAATCGATCCAAAGAGGAAATCCCGGGTTCAAGAGGCGCTTAATTAC 896
||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 900 GTACAATCGAGGAAAATCGATCCGAAGAGGAAATCCCGGGTTCAAGAAGCGCTTAATTAC 959
Query 897 TATTTGATCGAGTCATCCGTAGCCCTTTTCATCTCCTTCATGATTAACCTGTTTGTGACT 956
|||||||||||||||||||| || |||||||||||||||||||||||| |||||||||||
Sbjct 960 TATTTGATCGAGTCATCCGTCGCACTTTTCATCTCCTTCATGATTAACTTGTTTGTGACT 1019
Query 957 ACTGTCTTTGCAAAGGGATTTTATGGAACTGAGAAAGCTAATAACATTGGCCTAGTTAAT 1016
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1020 ACTGTCTTTGCAAAGGGGTTTTATGGAACTGAGAAAGCTAATAACATTGGCCTAGTTAAT 1079
Query 1017 GCTGGTCAGTATCTTCAAGAAAAGTTTGGAGGTGGGCTTCTTCCGATTCTTTATATATGG 1076
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 1080 GCTGGTCAGTATCTTCAAGAAAAGTTTGGAGGCGGGCTTCTTCCGATTCTTTATATCTGG 1139
Query 1077 GGAATCGGGTTGTTAGCAGCCGGACAGAGCAGTACAATAACTGGTACATATGCTGGACAG 1136
|| ||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 1140 GGTATCGGGTTGTTAGCAGCCGGACAAAGCAGTACGATAACTGGTACATATGCTGGACAG 1199
Query 1137 TTTATAATGGGCGGTTTTCTGAACCTCCGGCTTAAGAAATGGATGAGGGCAGTAATAACA 1196
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1200 TTTATAATGGGCGGTTTTCTGAATCTCCGGCTTAAGAAATGGATGAGGGCAGTAATAACA 1259
Query 1197 AGAAGCTGTGCTATTGTGCCAACCATGATTGTGGCAATCGTGTTCAATACTTCTGAAGCT 1256
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 1260 AGAAGCTGTGCTATTGTGCCTACAATGATTGTGGCAATCGTGTTCAATACTTCTGAAGCT 1319
Query 1257 TCCTTGGATGTTTTGAATGAATGGCTCAATGTGCTTCAGTCTGTACAAATTCCTTTTGCT 1316
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1320 TCCTTGGATGTTTTGAATGAATGGCTCAATGTCCTTCAGTCTGTACAAATTCCTTTTGCT 1379
Query 1317 CTTCTGCCTCTTCTAACCTTGGTATCTAAAGAAGAAATTATGGGAGACTTCAAGATTGGT 1376
||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1380 CTTCTCCCTCTTCTAACCTTGGTATCCAAAGAAGAAATTATGGGAGACTTCAAGATTGGG 1439
Query 1377 CCCATTCTCCAGAGAATAGCTTGGACTGTGGCTGCACTTGTAATGATCATCAACGGGTAT 1436
|| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1440 CCTATTCTCCAGAGAATAGCTTGGACTGTGGCTGCACTTGTAATGATCATCAATGGGTAT 1499
Query 1437 CTTCTGTTGGATTTCTTTGTATCAGAAGTCGACGGGTTTATGTTTGGAGTTACGGTCTGC 1496
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1500 CTTCTGTTGGATTTCTTTGTATCAGAAGTCGACGGGTTTCTGTTTGGAGTTACGGTCTGC 1559
Query 1497 GTCTGGACAACTGCTTATATCGCTTTTATAGTCTACCTCATTTCACACAGCAACTTTTTT 1556
|||||||| |||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 1560 GTCTGGACGACTGCTTATATCGCCTTTATAGTGTACCTCATTTCACACAGCAACTTTTTT 1619
Query 1557 CCTTCTCCTTGGTCTTCCTCTTCCATAGAACTTCCCAAAAGAGTGTCCGTCTCCGATAGC 1616
|||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1620 CCTTCTCCTTGGTCATCCTCTTCCATAGAACTTCCCAAAAGAGTGTCCGTCTCCAATAGC 1679
Query 1617 TAG---CTGCACAAAAATAACTGCCCT 1640
||| |||||||||||||||||||||
Sbjct 1680 TAGTAGCTGCACAAAAATAACTGCCCT 1706
> AT2G23150.1 | Symbols: NRAMP3, ATNRAMP3 | natural resistance-associated
macrophage protein 3 | chr2:9856192-9858574 REVERSE
LENGTH=1769
Length=1769
Score = 678 bits (367), Expect = 0.0
Identities = 988/1282 (77%), Gaps = 66/1282 (5%)
Strand=Plus/Plus
Query 205 CACCGCCATTCTCGTGGCGGAAACTATGGTTATTCACCGGTCC-AGGTTTCTTAATGAGT 263
|||| || ||||| ||| ||| ||||||||||||||||| || ||||| ||||||||
Sbjct 152 CACCACCGTTCTCATGGAAGAAGCTATGGTTATTCACCGGACCTGGGTTT-TTAATGAGC 210
Query 264 ATAGCGTTTTTGGATCCAGGGAATTTAGAAGGAGATCTACAAGCTGGTGCAATCGCTGGC 323
|| |||||||| |||||||||||| | ||||||||||| ||||| ||||| | |||||
Sbjct 211 ATTGCGTTTTTAGATCCAGGGAATCTCGAAGGAGATCTTCAAGCCGGTGCGGTTGCTGGG 270
Query 324 TATTCTCTGTTATGGCTAT-TGATGTGGGCAACAGCTATGGGAT-TGTTGATTCAGATGT 381
|| ||| |||||||||| | | |||||||||||||| ||||| | | ||| ||||| | |
Sbjct 271 TACTCTTTGTTATGGCT-TCTCATGTGGGCAACAGCAATGGG-TCTTTTGGTTCAGCTTT 328
Query 382 TATCAGCTAGAG-TTGGTGTTGCTACTGGTCGTCATTTAGCTGAGCTTTGTCGTGATGAG 440
| || ||||| | |||||||||| || |||||||| ||||||||||||||||||||||||
Sbjct 329 TGTCGGCTAG-GCTTGGTGTTGCGACAGGTCGTCACTTAGCTGAGCTTTGTCGTGATGAG 387
Query 441 TATCCGACTTGGGCTAGGTATGTGCTTTG-GTCT-ATGGCGGAACTTG-CTTTGATTGG- 496
||||| |||||||| || ||| | |||| | | ||||| ||| ||| ||||||||||
Sbjct 388 TATCCTACTTGGGCAAGA-ATG-GTTTTGTGGGTTATGGCTGAA-TTGGCTTTGATTGGA 444
Query 497 TGCTGATATTCAAGAGGTTATTGGTAGTGCTATTGCTATTCA-GATTCTT-AGCCGTGGT 554
| ||||||||||||| ||||||||||||||||||||||| || |||| || || |||
Sbjct 445 T-CTGATATTCAAGAAGTTATTGGTAGTGCTATTGCTAT-CAAGATT-TTGAGTAATGG- 500
Query 555 G-TCTTGCCTCTTTGGGCTGGTGTTGTTATTACGGCT-TCGGATTGttttttatttttGT 612
| | ||||||||||||||||||||||||||||| ||| | | ||||||| | || ||||
Sbjct 501 GATTTTGCCTCTTTGGGCTGGTGTTGTTATTACTGCTCTTG-ATTGTTTCGTCTTCTTGT 559
Query 613 TTCTAGAGAATTACGGTGTGAGGAAGTTAGAAGCTGTTTTTGCAGTT-TTGATCGCAACT 671
|||| ||||| ||||| | |||||| | || ||||| ||||||||| || ||||| ||
Sbjct 560 TTCTTGAGAACTACGGAATAAGGAAGCTCGAGGCTGTGTTTGCAGTTCTT-ATCGCTACA 618
Query 672 ATGGGTTTGTCCTTTGCTTGGATGTTTGGTGAAACCAAGCCGAGTGGGAAAGAACTTATG 731
||||| | || || ||||||||||||||| || | ||||| ||||| || ||| |
Sbjct 619 ATGGGAGTCTCATTCGCTTGGATGTTTGGTCAAGCTAAGCCAAGTGGCTCTGAGCTTCTC 678
Query 732 ATAGGTATTTTACTACCGAGGCTTAGCTCGAAGA-CAATT-AGACAAGCAGTAGGTGTTG 789
|| || ||||| |||||| || || || |||| | || ||| ||||||| || ||||
Sbjct 679 ATTGGGATTTTGGTACCGAAACTGAGTTC-AAGAACGATACAGA-AAGCAGTTGGAGTTG 736
Query 790 TTGGCTGTGTCATAATGCCTCACAATGTGTTT-TTGCATTCGGCTCTTGTACAATCGAG- 847
| || || | |||||||| |||||||||||| || || || |||||||| ||||| ||
Sbjct 737 TGGGTTGCATTATAATGCCACACAATGTGTTTCTT-CACTCAGCTCTTGTTCAATCTAGA 795
Query 848 GAAAATCGATCCAAA-GAG-GAAATCCCGGGTTCAAGAGGCGCTTAATTACTATTTGATC 905
||| ||||| ||| || ||||| ||| || ||||| ||||| || ||||| ||
Sbjct 796 GAAG-TCGAT--AAACGACAGAAATACCGAGTCCAAGAAGCGCTAAACTACTACACAATA 852
Query 906 GAGTC-ATCCGTAGCCCTTTTCATCTCCTTCATGATTAACCTGTTTGTGACTACTGTCTT 964
|| || | | | || |||||||||||||| |||| || |||||||| || ||||| ||
Sbjct 853 GAATCCA-CAATTGCTCTTTTCATCTCCTTTTTGATCAATCTGTTTGTCACAACTGT-TT 910
Query 965 T-GC-AAAGGGATTTTATGGA-ACTGAGAAAGCTAATAACATTGGCCTAGTTAATGCTGG 1021
| || |||||| |||||| | ||||| || |||| ||| || | ||||| || ||
Sbjct 911 TCGCCAAAGGG-TTTTATA-ATACTGACCTCGCCAATAGCATCGGTTTGGTTAACGCGGG 968
Query 1022 TCAGTATCTTCAAGA-AAAGTTTGGAGGTGG-GCTTCTTCC-GATTCTTTATATATGGG- 1077
||||||||||| || ||| | |||||| || | | |||| ||| || || || ||||
Sbjct 969 ACAGTATCTTCAGGAGAAA-TATGGAGGCGGTG-TG-TTCCCGATACTATACATTTGGGC 1025
Query 1078 GAATCGGGTTGTTAGCAGCCGGACAGAGCAGTACAATAACTGGTACATATGCTGGACAGT 1137
|| ||||| | ||||| || || || ||||| || || || ||||||||||| |||||||
Sbjct 1026 GA-TCGGGCTATTAGCTGCTGGCCAAAGCAGCACTATTACCGGTACATATGCGGGACAGT 1084
Query 1138 TTATAATGGGCGGTTTTCTGAACCTCCGGCTTAAGAAATGGATGAGGGCAGTAATAACAA 1197
| ||||||||||| ||||| || || | ||||||||| |||| || | || |||
Sbjct 1085 TCATAATGGGCGGGTTTCTTAATTTCAAAATGAAGAAATGGTTGAGAGCTTTGATCACAC 1144
Query 1198 GAAGCTGTGCTATTGTGCCAACCATGATTGTGGCAATCGTGTTCAATACTTCTGAAGCTT 1257
||||||| ||||| | ||||| || || || || | ||||| || | || ||||||
Sbjct 1145 GAAGCTGCGCTATCATTCCAACTATTATCGTTGCGCTAGTGTTTGATTCATCGGAAGCTA 1204
Query 1258 C-CTTGGATGTTTTGAATGAATGGCTCAATGTGCTTCAGTCTGTACAAATTCCTTTTGCT 1316
| || | |||| || || || ||||| || ||||||||||| | ||||| || |||||
Sbjct 1205 CACTCG-ATGTCTTAAACGAGTGGCTTAACGTGCTTCAGTCCATTCAAATCCCCTTTGCA 1263
Query 1317 CTTC-TGCCTCTT-CTAACCTTGGTATCTAAAGAAGAAATTATGGG-AGACTTCAAGATT 1373
|| | | || ||| || ||||| || || ||| |||| ||||| || ||||||||||
Sbjct 1264 CT-CATTCC-CTTACTTTGTTTGGTCTCCAAGGAACAAATCATGGGTAG-CTTCAAGATT 1320
Query 1374 GGTCCCATTCTCCA-GAGAATAGCTTGGACT-GTGGCTGCACTTGTAATGATCATCAACG 1431
||||| || | || || ||| || ||| || || ||||| || || || || |||||||
Sbjct 1321 GGTCCT-TTGTACAAGACAATCGCGTGG-CTTGTTGCTGCGCTCGTGATAATGATCAACG 1378
Query 1432 GGTATCTTCTGTTGGATTTCTT 1453
| |||||| ||||||| |||||
Sbjct 1379 GTTATCTTTTGTTGGAGTTCTT 1400
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 81023679630
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5