BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg923010
Length=811
Score E
Sequences producing significant alignments: (Bits) Value
AT1G47260.1 | Symbols: APFI, GAMMA CA2 | gamma carbonic anhydra... 898 0.0
AT1G47420.1 | Symbols: SDH5 | succinate dehydrogenase 5 | chr1:... 198 6e-50
> AT1G47260.1 | Symbols: APFI, GAMMA CA2 | gamma carbonic anhydrase
2 | chr1:17321173-17323484 REVERSE LENGTH=1185
Length=1185
Score = 898 bits (486), Expect = 0.0
Identities = 534/557 (96%), Gaps = 4/557 (1%)
Strand=Plus/Plus
Query 4 ATCGGAGAATCAC--AAAAATGGGAACCCTAGGAAGAGCAATTTACACTGTGGGTAACTG 61
||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 119 ATCGGAGAATCACAAAAAAATGGGAACCCTAGGACGAGCAATTTACACTGTGGGTAACTG 178
Query 62 GATTCGTGGAACTGGTCAAGCTCTTGATCGCGTTGGTTCTCTTCTTCAAGGAAGCCACCG 121
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 179 GATTCGTGGAACTGGTCAAGCTCTTGATCGCGTTGGTTCTCTTCTTCAAGGAAGTCACCG 238
Query 122 CATCGAGGAACATCTGTCGAGGCATCGGACGTTGATGAATGTGTTTGATAAATCTCCATT 181
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 239 TATCGAGGAACATCTGTCGAGGCATCGGACGTTGATGAATGTGTTTGATAAATCACCATT 298
Query 182 GGTTGATAAAGATGTGTTTGTTGCTCCGAGTGCTTCTGTTATTGGTGATGTTCAGATCGG 241
||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 299 GGTGGATAAAGATGTGTTTGTGGCTCCGAGTGCTTCTGTTATTGGTGATGTTCAGATCGG 358
Query 242 AAAAGGCTCCTCCATTTGGTATGGTTGTGTTCTTCGAGGTGATGTGAATAACATCAGTGT 301
||||||||| || ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 359 AAAAGGCTCGTCGATTTGGTATGGCTGTGTTCTTCGAGGTGATGTGAATAACATCAGTGT 418
Query 302 TGGATCCGGGACGAATATCCAAGACAATACGCTTGTACATGTTGCGAAA-ACCAACATAA 360
|||||| ||||||||||||||||| |||||||||||||||||||| ||| ||||||||||
Sbjct 419 TGGATCTGGGACGAATATCCAAGATAATACGCTTGTACATGTTGC-AAAGACCAACATAA 477
Query 361 GTGGCAAGGTTCTACCTACACTAATTGGGGACAATGTAACAGTAGGTCATAGTGCTGTCA 420
||||||||||||||||||| || |||||||||||||||||||||||||| ||||||||||
Sbjct 478 GTGGCAAGGTTCTACCTACTCTGATTGGGGACAATGTAACAGTAGGTCACAGTGCTGTCA 537
Query 421 TTCATGGGTGTACTGTTGAGGATGAGGCTTTTGTTGGCATGGGAGCTACACTACTTGATG 480
||||||||||||||||||||||||| ||||||||||| |||||||| |||||||||||||
Sbjct 538 TTCATGGGTGTACTGTTGAGGATGATGCTTTTGTTGGTATGGGAGCAACACTACTTGATG 597
Query 481 GTGTTGTGGTTGAGAAACATGCCATGGTTGCTGCTGGTTCCCTTGTGAAACAGAACACGC 540
|||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 598 GTGTGGTGGTTGAGAAACATGCCATGGTTGCTGCTGGTTCTCTTGTGAAACAGAACACGC 657
Query 541 GAATCCCTTCTGGAGAG 557
|||||||||||||||||
Sbjct 658 GAATCCCTTCTGGAGAG 674
Score = 409 bits (221), Expect = 3e-113
Identities = 243/254 (96%), Gaps = 0/254 (0%)
Strand=Plus/Plus
Query 556 AGTCAGCAAAGAACTACATCAATCTCGCACAGATTCACGCCTCAGAGAATTCAAAGTCAT 615
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 742 AGTCAGCAAAGAATTACATCAATCTCGCACAGATTCACGCCTCAGAGAATTCAAAGTCAT 801
Query 616 TTGATCAGATTGAGGTTGAGAGAGCGCTCAGGAAGAAGTATGCACACAAGGACGAGGATT 675
|||| ||||| ||||||||||||||||| |||||||||||||||| ||||||||||||||
Sbjct 802 TTGAGCAGATCGAGGTTGAGAGAGCGCTTAGGAAGAAGTATGCACGCAAGGACGAGGATT 861
Query 676 ACGATTCAATGCTTGGAATTACCCGTGAAACCCCACCCGAGTTGATTCTTCCCGACAATG 735
|||||||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 862 ACGATTCAATGCTTGGGATTACCCGTGAAACTCCACCGGAGTTGATTCTTCCCGACAATG 921
Query 736 TCTTACCAGGTGGTAAACCCGTCGCCAAGGTTCCGAGTACTCAGTACTTCTAATTCCAAT 795
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 922 TCTTACCAGGTGGTAAACCCGTCGCCAAGGTTCCGTCTACTCAGTACTTCTAATTCCAAT 981
Query 796 ATCAGGTTGTTTTT 809
|||||||||||||
Sbjct 982 CTCAGGTTGTTTTT 995
> AT1G47420.1 | Symbols: SDH5 | succinate dehydrogenase 5 | chr1:17395518-17397255
REVERSE LENGTH=1109
Length=1109
Score = 198 bits (107), Expect = 6e-50
Identities = 145/163 (89%), Gaps = 3/163 (2%)
Strand=Plus/Plus
Query 4 ATCGG-AGAATCACAAAAATGGGAACCCTAGGAAGAGCAATTTACACTGTGGGTAACT-G 61
||||| | ||||| ||||||||||||||||||| |||| ||| ||||||||||||| | |
Sbjct 62 ATCGGAAAAATCAGAAAAATGGGAACCCTAGGACGAGCGATTCACACTGTGGGTAA-TCG 120
Query 62 GATTCGTGGAACTGGTCAAGCTCTTGATCGCGTTGGTTCTCTTCTTCAAGGAAGCCACCG 121
|||||||||||||| ||||| | | ||||||||||||||||||||||||||||||||
Sbjct 121 GATTCGTGGAACTGCCCAAGCCCAAGCTCGCGTTGGTTCTCTTCTTCAAGGAAGCCACCA 180
Query 122 CATCGAGGAACATCTGTCGAGGCATCGGACGTTGATGAATGTG 164
||||||| |||||||||||||||||||||||||||| | ||||
Sbjct 181 CATCGAGAAACATCTGTCGAGGCATCGGACGTTGATTACTGTG 223
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39484039542
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5