BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg923020

Length=354
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G47320.1 | Symbols:  | transposable element gene | chr1:1734...   387    5e-107
  AT1G47317.1 | Symbols:  | Encodes a defensin-like (DEFL) family...   248    2e-65 


> AT1G47320.1 | Symbols:  | transposable element gene | chr1:17349099-17350163 
FORWARD LENGTH=780
Length=780

 Score =  387 bits (209),  Expect = 5e-107
 Identities = 266/293 (91%), Gaps = 5/293 (2%)
 Strand=Plus/Plus

Query  23   ATGGCGGCATTGAAAACAACAATCTTCATCATTTTCGGCTTCTATCTCTCATGTACGTTG  82
            ||| ||||||||| || |||||||| |||||||||||  |||||||||||||||||||||
Sbjct  1    ATGACGGCATTGAGAAGAACAATCTCCATCATTTTCGTTTTCTATCTCTCATGTACGTTG  60

Query  83   TTGGTGGGTATCTTTGGAGTTCAAGCC--AAA-TTATGCAAGACAGATGAAGAGTGTGAC  139
            || |||  |||||||||||||||||||  ||| |||||||||||||||||||| ||||  
Sbjct  61   TTCGTGAATATCTTTGGAGTTCAAGCCAGAAATTTATGCAAGACAGATGAAGATTGTGTG  120

Query  140  CGGCGATGTCAAGATGTAGGTGCGAAGTGTATTCTTGGAATATGCCATTGTTCGCGCCTA  199
              |||||||||||||  ||||||||| ||||||||||||||||||||||||||||||| |
Sbjct  121  TTGCGATGTCAAGATCCAGGTGCGAACTGTATTCTTGGAATATGCCATTGTTCGCGCC-A  179

Query  200  A-AAGTTGAGACTGAGCCGACCAAGGCGAGAAGATGCAAGACTGATAGTGATTGTCCTGA  258
            | ||||||||||||||| |||||||| || |||||||||||||||| |||||||||||||
Sbjct  180  ACAAGTTGAGACTGAGCTGACCAAGGTGATAAGATGCAAGACTGATCGTGATTGTCCTGA  239

Query  259  TTCTCATCAATGCCTTAAAGATTATTATTATGCTTGCCTTAATAATGGAGAAT  311
            |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct  240  TTCTCATCAATGCCCTAAAGATTATTATTATGCTTGCCTTAATAATGGAGAAT  292


> AT1G47317.1 | Symbols:  | Encodes a defensin-like (DEFL) family 
protein. | chr1:17347094-17347515 FORWARD LENGTH=312
Length=312

 Score =  248 bits (134),  Expect = 2e-65
 Identities = 258/316 (82%), Gaps = 15/316 (5%)
 Strand=Plus/Plus

Query  23   ATGGCGGCATTGAAAACAACAATCTTCATCATTTTCGGCT-TCTATCTCTCATGTACGTT  81
            |||||| ||||||||||||||||||| ||||| |||   | ||||| ||||||||||  |
Sbjct  1    ATGGCGACATTGAAAACAACAATCTTTATCATCTTC-ATTCTCTATATCTCATGTACAAT  59

Query  82   GTTGGTGGGTATCTTTGGAGTTCAAGCC-A--AATTATGCAAGAC-AGATGAAGAGTGTG  137
            ||| ||   ||||||| ||||||||||| |   || ||||  ||| | |  |||||||||
Sbjct  60   GTTTGTAAATATCTTTAGAGTTCAAGCCGATGCATCATGCTTGACAACA-AAAGAGTGTG  118

Query  138  ACCG-GCGATG-TCAAGATGTAGGTGCGA-AGTGTATTCTTGGAATA-TGCCATTGTTCG  193
               | ||| || || ||| | || ||| | ||||||||| |||   | ||||||||| ||
Sbjct  119  -TGGTGCGTTGTTC-AGACGAAGATGC-ACAGTGTATTCATGG-CGAGTGCCATTGTCCG  174

Query  194  CGCCTAAAAGTTGAGACTGAGCCGACCAAGGCGAGAAGATGCAAGACTGATAGTGATTGT  253
            | ||||||||| || | ||||||||||||||||| | | ||||||||||||  |||||||
Sbjct  175  CACCTAAAAGTCGACATTGAGCCGACCAAGGCGATACGGTGCAAGACTGATCTTGATTGT  234

Query  254  CCTGATTCTCATCAATGCCTTAAAGATTATTATTATGCTTGCCTTAATAATGGAGAATGT  313
            |||||| |||||||||||| |||| || |||||||||| |||||||||||||||||||||
Sbjct  235  CCTGATCCTCATCAATGCCCTAAATATGATTATTATGCATGCCTTAATAATGGAGAATGT  294

Query  314  ACTTGTATCTCTGTTT  329
            ||||||||||||||||
Sbjct  295  ACTTGTATCTCTGTTT  310



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 16588357170


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5