BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg923021
Length=1220
Score E
Sequences producing significant alignments: (Bits) Value
AT1G33020.1 | Symbols: | F-box and associated interaction doma... 97.1 3e-19
AT5G38810.1 | Symbols: | F-box and associated interaction doma... 80.5 3e-14
AT1G30935.1 | Symbols: | pseudogene, F-box protein family, con... 80.5 3e-14
AT3G57580.1 | Symbols: | F-box and associated interaction doma... 67.6 3e-10
AT1G30920.1 | Symbols: | F-box family protein | chr1:11004242-... 65.8 1e-09
> AT1G33020.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr1:11962746-11964832 FORWARD LENGTH=1647
Length=1647
Score = 97.1 bits (52), Expect = 3e-19
Identities = 427/596 (72%), Gaps = 74/596 (12%)
Strand=Plus/Plus
Query 488 CTTTTTCGGGTTTGATCCGATTGACAAGCAATTCAAGGTTTTGCTCATGGATTATCCAT- 546
|||||| |||||||||||||||||||||||||||||||| |||| |||| | ||| ||
Sbjct 465 CTTTTTAGGGTTTGATCCGATTGACAAGCAATTCAAGGTATTGCGCATGAAATATA-ATG 523
Query 547 -T--TGGTCTTGATCATCATAAAATTCTGACAGTAGGAAAG-GG-AGACATGAGTTGGAG 601
| |||| ||| | ||| | ||||||||| ||| || || | | ||||| |||||
Sbjct 524 ATCGTGGTATTGTTGTTCACCATATTCTGACATTAG-AACCTGGCAAA-ATGAGGTGGAG 581
Query 602 AAGGATTAAATGTTCCTTAAAACATT--C-TATTATGAGTAAAGGGATATGCATTAATGG 658
|| || |||| ||||| ||| | | || || | || | ||||||| |||||
Sbjct 582 AAAAATCCGATGTCCCTTAGCCCATGAACCT-TTCTGGG-AA-GAGATATGCGCCAATGG 638
Query 659 GGTTTTGTATTACTTAGGTGAGACGT-CTGCTG-ATAATCCGCTC--ATA-GTTTGTTTT 713
||||||||||||||||| ||| || ||| || | || | ||| ||| | |||
Sbjct 639 GGTTTTGTATTACTTAGCTGA-ACCAACTGATGGAGGGTCTTATGTGATATGTT-GCTTT 696
Query 714 GATATTAGCTCTGAGAAATTCAAATTTATTCACCGGGAAA-GCTCT--TG-T--C---A- 763
||| || | ||||||||||||||||||||| || | ||| ||| | || | | |
Sbjct 697 GATGTTCGGTCTGAGAAATTCAAATTTATTGAC-GCAAAATGCTTTGGTGATTTCTCTAT 755
Query 764 --A-TTGATAAACTACAAGGGTAAATTAGGTGTGATTTA-TCGTGAT-TATT-T-C-G-C 814
| ||||| || || ||||||||| |||||| |||| | | | || ||| | | | |
Sbjct 756 TCAATTGATCAATTATAAGGGTAAACTAGGTGGGATT-AGTTG-GAAGTATGATACCGTC 813
Query 815 --T--AATGA-TGCCATTGAGTTGCGTGTGTGGATTCTAGAGGATGTCGAGAAACATGAA 869
| || | | || |||||||| | ||||| |||||||||||||||||||||| |||
Sbjct 814 GATGGAAAGCGTACCGTTGAGTTGTATATGTGGGTTCTAGAGGATGTCGAGAAACA-GAA 872
Query 870 -TGGTCTAAATATGCCTACTCTTCGA-GGGATAATAAATTCTTGGCTCATTTCGATTCCA 927
||||| ||||| | |||| ||| | ||| ||| | || | |||| |||||
Sbjct 873 ATGGTCCAAATACGTCTACCCTTTGCCGGGG-AAT---TCCTA--C-CATT---ATTCCG 922
Query 928 TTGTTGGAGTGACTGCTACGGGTGAAATAGTTTT-GTCGATGGCTGATTATAGGTTCAAG 986
||| |||||||| |||| ||||| || ||||| ||| | | || | | | | | |
Sbjct 923 TTGCAGGAGTGACAGCTAAAGGTGATATTGTTTTTGTCAA-GACTTAC-ACA--T-CTA- 976
Query 987 CAACCGTTTTAT-TTTTGCTACTTCAATCCCGAAA-GAAACACTTTCCAACGTGTT 1040
||||||||||| |||| |||| | |||||||||| |||| ||||||||||| |||
Sbjct 977 -AACCGTTTTATGTTTT-CTACGTAAATCCCGAAAAGAAA-ACTTTCCAACGCGTT 1029
> AT5G38810.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr5:15540484-15541540 REVERSE LENGTH=780
Length=780
Score = 80.5 bits (43), Expect = 3e-14
Identities = 96/120 (80%), Gaps = 10/120 (8%)
Strand=Plus/Plus
Query 763 AATTGATAAACTACAAGGGTAAATTAGGTGTGATTTA-TCGTGATTATT-TCGCTAATGA 820
|||| |||||||||||||||||||||||||||| | | | | || | | | ||| |||
Sbjct 512 AATTTATAAACTACAAGGGTAAATTAGGTGTGACTAAATTG-GAGTGTGAT-GCTGGTGA 569
Query 821 TGC-CAT-----TGAGTTGCGTGTGTGGATTCTAGAGGATGTCGAGAAACATGAATGGTC 874
|| ||| ||||||| |||||||| ||||||||||||| |||||||| ||||||||
Sbjct 570 TGGACATCCCCGTGAGTTGTGTGTGTGGGTTCTAGAGGATGTTGAGAAACAGGAATGGTC 629
> AT1G30935.1 | Symbols: | pseudogene, F-box protein family, contains
F-box domain Pfam:PF00646 | chr1:11017436-11018990 REVERSE
LENGTH=1555
Length=1555
Score = 80.5 bits (43), Expect = 3e-14
Identities = 330/458 (72%), Gaps = 61/458 (13%)
Strand=Plus/Plus
Query 481 CGTATACCTTTTTCGGGTTTGATCCGATTGACAAGCAATTCAAGGTTTTGCTCATGG--A 538
|||||| || ||| ||||||||||||||||| ||| |||||||||| ||| |||||| |
Sbjct 437 CGTATAGCTATTTAGGGTTTGATCCGATTGATAAGGAATTCAAGGTATTGTTCATGGATA 496
Query 539 -TTATCCATTTGGT--CTT-----GAT---CATCATAAAATTCTGACAGTAGGAAAGGGA 587
|| | |||| | ||| ||| ||||| | ||| ||||| | |||| |||
Sbjct 497 CTTGT-GATTTTATAGCTTCGAAGGATGAAGATCATTATATTTTGACATTGGGAACTGGA 555
Query 588 GACA-TG-AGTTGGA-GAAGGATTAAATGTTCC-TTAAAACAT---TCTATTATGAGTAA 640
|| | || || |||| ||| ||| |||| ||| || | |||| || || || | |
Sbjct 556 GA-ATTGAAG-TGGAGGAA-GATCCAATG-TCCTTTTACACATGAGCCT-TTTTG-GGAG 609
Query 641 AGGGATATGCATTAATGGGGTTTTGTATTACT-TAGGTGAG-ACGTCTG---CTGAT--A 693
| |||||||||||||||||||||||||||||| | | | | | |||| || || |
Sbjct 610 A-GGATATGCATTAATGGGGTTTTGTATTACTCT-GCTTACTAT-TCTGATTCTAATGGA 666
Query 694 A--TC-CG-CTCATAGTTTGTTTTGATATTAGCTCTGAGAAATTCAAATTT-ATTCACCG 748
| || | ||||||| ||| |||||| |||| |||||||||||||| ||| || ||
Sbjct 667 AGGTCTCATCTCATAGCTTGCTTTGATGTTAGGTCTGAGAAATTCAA-TTTCATAG-CCA 724
Query 749 GGAAAGC-TCT-T--G-TCAATTGATAAACTACAAGGGTAAATTAGGTGTGATTTATCGT 803
||| | || | | ||| ||||||||||| ||||| |||||| ||| |||| || |
Sbjct 725 CAAAA-CATCGGTACGATCAGTTGATAAACTATAAGGGGAAATTATGTGGGATTAATT-T 782
Query 804 G-ATTATT-TCG-C-TAATGATG-----CCA-TTGAGTTGCGTGTGTGGATTCTAGAGGA 853
| | ||| | | | | || || || || ||||| || ||||| || |||||||
Sbjct 783 GGAGTATGCTAGGCATGTTGGTGGATTTCCTGTTAAGTTGAGTATGTGGGTTTTAGAGGA 842
Query 854 TGTCGAGAAACATGAATGGTCTAAATATGCCTACTCTT 891
||||||||||| |||||||| ||| ||| ||||||||
Sbjct 843 TGTCGAGAAACCGGAATGGTCGAAACATGTCTACTCTT 880
> AT3G57580.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr3:21320491-21322379 REVERSE LENGTH=1889
Length=1889
Score = 67.6 bits (36), Expect = 3e-10
Identities = 36/36 (100%), Gaps = 0/36 (0%)
Strand=Plus/Plus
Query 640 AAGGGATATGCATTAATGGGGTTTTGTATTACTTAG 675
||||||||||||||||||||||||||||||||||||
Sbjct 937 AAGGGATATGCATTAATGGGGTTTTGTATTACTTAG 972
> AT1G30920.1 | Symbols: | F-box family protein | chr1:11004242-11005444
REVERSE LENGTH=1203
Length=1203
Score = 65.8 bits (35), Expect = 1e-09
Identities = 37/38 (97%), Gaps = 0/38 (0%)
Strand=Plus/Plus
Query 489 TTTTTCGGGTTTGATCCGATTGACAAGCAATTCAAGGT 526
||||| ||||||||||||||||||||||||||||||||
Sbjct 475 TTTTTAGGGTTTGATCCGATTGACAAGCAATTCAAGGT 512
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59939450730
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5