BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg923032
Length=1297
Score E
Sequences producing significant alignments: (Bits) Value
AT3G61380.1 | Symbols: | Phosphatidylinositol N-acetyglucosami... 1096 0.0
> AT3G61380.1 | Symbols: | Phosphatidylinositol N-acetyglucosaminlytransferase
subunit P-related | chr3:22708482-22711279
REVERSE LENGTH=2444
Length=2444
Score = 1096 bits (593), Expect = 0.0
Identities = 641/665 (96%), Gaps = 0/665 (0%)
Strand=Plus/Plus
Query 568 TCAAGAGAAGACTCCAATCTGCTGTTGGAAAGAAGTCATGTGATGTTTCTGTTAATAAGA 627
||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 695 TCAAGAGAAGACTACAATCTGCTGTTGGAAAGAAGTCATGTGATGTTTCTGTTGATAAGA 754
Query 628 GGAGCCAAAACTGTTATATGCAAGAAGAGATACAGAGCAAATCAGAGGAGAAGCATGATG 687
||||||||||||||| || |||||||||||||||||| ||||||||||||||||||||||
Sbjct 755 GGAGCCAAAACTGTTCTACGCAAGAAGAGATACAGAGTAAATCAGAGGAGAAGCATGATG 814
Query 688 TTTCGGATAAAGAAGAACCGTTCTGTAACGAAAGAACGTCTGAGGATGGTAAAGAAGAGA 747
|||||||||||||||||||||||||| ||||||||||| | |||||||||||||| ||||
Sbjct 815 TTTCGGATAAAGAAGAACCGTTCTGTGACGAAAGAACGACCGAGGATGGTAAAGAGGAGA 874
Query 748 CTATCTACTCAAGCGAAGATTCAAAGAAGATTATGTCTGGCTTATATATTGCAGCCAAGA 807
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 875 CTATCTACTCAAGCGAAGATTCAAAGAAGATAATGTCTGGCTTATATATTGCAGCCAAGA 934
Query 808 AGCACTTGTCTGAAATGCTTGCAAAAGGAGATATAGATGTGAATTTACCAGACAAGGAAG 867
| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 935 AACACTTGTCTGAAATGCTTGCAAATGGAGATATAGATGTGAATTTACCAGACAAGGAAG 994
Query 868 TGCCAAGAATCCTGGGGAAGATTCTTTATCTCCATGAGTTCTGTTCACCAGCAGACAGTC 927
||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 995 TGCCAAGAATCCTGGGGAAGATTCTTTCTCTCCCTGAGTTCTGTTCACCAGCAGACAGTC 1054
Query 928 CTAGATTGATCCCGGCACATAATTTGGTTAGTACTCTAAGTCAGACAACTGAGAAACCAG 987
|||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 1055 CTAGATTGATCCCGGCACATGATTTGGTTAGTACTCTAAGTCAGACAACTGAGCAACCAG 1114
Query 988 AGATTCTGCAAACACCAGAAACCAGTTCAGCTACAAATGATCTGATTGATGAAGATTCGG 1047
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1115 AGATTCTACAAACACCAGAAACCAGTTCAGCTACAAATGATCTGATTGATGAAGATTCGG 1174
Query 1048 ATAAAGAAGATGATACATTGTCTACCATTGATGTCTCTGTTCCTAGAGACTATGGGAATG 1107
||||||| || |||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct 1175 ATAAAGACGACGATACATTATTTACCATTGATGTCTCTGTTCCTAGAGACTATGGGAATG 1234
Query 1108 AAACTGAGAATATAGACAAGGAAGAGGAGAGTGAGATAGATCCATTATCTGAAACTTGTA 1167
||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 1235 AAACTGAGAATATAGACAATGATGAGGAGAGTGAGATAGATCCATTATCTGAAACTTGTA 1294
Query 1168 GCTCTTCCGTTTCCCGAGAAGTTGAAAATGTTGATGAAGATGTAGAAAAGGAAATGTTGA 1227
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1295 GCTCTTCCGTTTCCCGAGAAGTCGAAAATGTTGATGAAGATGTAGAAAAGGAAATGTTGA 1354
Query 1228 ACCAC 1232
|||||
Sbjct 1355 ACCAC 1359
Score = 510 bits (276), Expect = 1e-143
Identities = 312/329 (95%), Gaps = 3/329 (1%)
Strand=Plus/Plus
Query 241 AGAAAGAAGGAGAGATTCAAACTTGTAAGGACTTATTGGAGGCTTTTCATGTTTTGGGTT 300
|||||||||||||||| ||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 314 AGAAAGAAGGAGAGATCCAAACCTGTAAAGACTTATTGGAGGCTTTTCATGTTTTGGGTT 373
Query 301 CT---GAAGAAGAATCATTCCTCAAGAAGAAGCTTTCACATGAAGATGTTCAAAGGTTGG 357
|| ||||||||||||||||||||||||||||||||| ||||||||| ||||| ||||
Sbjct 374 CTGAAGAAGAAGAATCATTCCTCAAGAAGAAGCTTTCAAATGAAGATGCTCAAACCTTGG 433
Query 358 GAGATTCTAAGAGAGTAGAAGAAGAAAAGCCTGAAGTTGTCTCGAAGCAAGAGGCGGTGG 417
||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 434 GAGATTCTAAGAGAGTAGAAGAAGAAAAGCCTGAAGTAGTATCGAAGCAAGAGGCGGTGG 493
Query 418 TAATACCGAAGAGGAAAGCTAACTTTTTCAGCAGGAAATGGAAATCAGAAGAGAGGAGAA 477
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 494 TGATACCGAAGAGGAAAGCTAACTTTTTCAGCAGGAAATGGAAATCAGAAGAGAGGAGAA 553
Query 478 ACAGATCTCAAGTTGCGAAAACAATTGTGGTTTTGAAACCTGGTTCAAATACTTTGGATG 537
|||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||
Sbjct 554 ACAGATCTCAAGTTGCAAAAACAATTGTGGTTTTGAAACCTGGTCCAAATACTTTGGATG 613
Query 538 TTGATTCTTCATCTGGAGTGCATTCTACT 566
||||||||||| ||||| |||||||||||
Sbjct 614 TTGATTCTTCAACTGGACTGCATTCTACT 642
Score = 195 bits (105), Expect = 1e-48
Identities = 112/115 (97%), Gaps = 1/115 (1%)
Strand=Plus/Plus
Query 128 GTTATCCGGTAATGAAATGAAGCAGATTACATGTTCTTGTGAGAGCTCTCATGAGAGTGT 187
||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 133 GTT-TCAGGTAATGAAATGAAGCAGATTACATGTTCTTGTGAGAGCTCTCATGAGAGTGT 191
Query 188 TGATGAGGAAGATATCCATGTTTCGGTCGCTGGTGATGAACATGTAGAGACTGAG 242
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 192 TGATGAGGAAGATATCCATGTTTCGGTCGCCGGTGATGAACATGTAGAGACTGAG 246
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63804892695
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5