BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg923035
Length=1158
Score E
Sequences producing significant alignments: (Bits) Value
AT1G47390.1 | Symbols: | F-box and associated interaction doma... 1421 0.0
> AT1G47390.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr1:17379544-17380656 FORWARD LENGTH=1113
Length=1113
Score = 1421 bits (769), Expect = 0.0
Identities = 1022/1137 (90%), Gaps = 45/1137 (4%)
Strand=Plus/Plus
Query 21 ATGGTTCCTGAGGAGAAGCTTCCGTGTGACCTGAACCTGATTGAAGAGACGCTTTTTCGT 80
|||| |||||||||||||||||| ||| |||| ||||||||||||| || | ||||
Sbjct 1 ATGGCTCCTGAGGAGAAGCTTCC--GTG---TGAA-CTGATTGAAGAGATACTCTCTCGT 54
Query 81 GTCCCTCCTGAATCTCTTGTTCGCTTCAGAACCGTTTCTAAGAAATGGAACGCCCTTTTC 140
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 55 GTCCCTCCTGAATCTCTTGTTCGCTTCAGAACCGTTTCTAAGAAATGGAACGCCCTCTTC 114
Query 141 GACGATAAGATGTTCATTAACAACCACAAGATGACATTTCGATTCATCTTAGCAACC-AA 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 115 GACGATAAGATGTTCATTAACAACCACAAGATGACATTTCGATTCATCTTAGCAACCGAA 174
Query 200 TTCCAAGTTCTACTCGGTAAGCATCACTCCAAAGATAGAAGTGCGTGAGTTAACTTTAGA 259
|| |||||||||||||||||||| |||||||||||||||||||||||||||| ||| ||
Sbjct 175 -TCTAAGTTCTACTCGGTAAGCATGACTCCAAAGATAGAAGTGCGTGAGTTAAGTTTGGA 233
Query 260 TATTCCCGGTTTAGAATCACATAAACTTAAAGTTTTGATTGATTGCAATGGGTTCTTGCT 319
|||||||||||||| | || ||||| |||| ||||||||||||||||||||||||||||
Sbjct 234 TATTCCCGGTTTAG-A--ACTTAAACCTAAAATTTTGATTGATTGCAATGGGTTCTTGCT 290
Query 320 ATGTGGCATGGATAAAGAA-GC--CGTGGTTTGGAACCCGTGGTTAAGACAGGCTAGATG 376
|||||||||||| |||||| || |||||||||||||||||||||||||||||||| |||
Sbjct 291 ATGTGGCATGGAAAAAGAAGGCATCGTGGTTTGGAACCCGTGGTTAAGACAGGCTAAATG 350
Query 377 GATGAAGCCAGAGGTAAACGACCAACCTATTTTGCGTTTCAATGGCATAGGTTATGAGTA 436
||| |||||| |||| || ||||||||| |||| |||||||||||||||||||||||||
Sbjct 351 GATAAAGCCAAAGGT-AA--ACCAACCTAGTTTGTGTTTCAATGGCATAGGTTATGAGTA 407
Query 437 TGATAACATGAAACTTGAGGA-TAATGGTTACAAGACACTTGTGTCTCATCCGAATGAAT 495
|||||||||||||||||| || || |||||||||||| ||||||||| |||| |||||||
Sbjct 408 TGATAACATGAAACTTGA-GAGTAGTGGTTACAAGACCCTTGTGTCTTATCCTAATGAAT 466
Query 496 TAG---CTACAAAATCAGTTTGGAAAATCCATGATTTTGCCTCCAATTCGTGGAAAGATA 552
||| |||| | ||||||||||||||||||||| |||||||||||||| |||||| |||
Sbjct 467 TAGACCCTACTAGATCAGTTTGGAAAATCCATGACTTTGCCTCCAATTCATGGAAATATA 526
Query 553 -AAGAGTTGGTTATTAGTGGTAGTAATGGTATTACTTTACTCGCCACAAGTGTAACGTTA 611
|| | ||||| || ||| |||||| |||| |||||||| ||| |||||||| | |
Sbjct 527 CAA-ATTTGGTCATGAGTTGTAGTAGTGGTGTTACTTTATTCGGTGCAAGTGTATCACTG 585
Query 612 AATGGAATTTTGTATTGGGTTGCCTCTTATCTACAGAATAATTCCTCGTTCGTCCTAGTT 671
||||||||||||||||||||||||||| ||||| |||||||||||| ||||||||| |||
Sbjct 586 AATGGAATTTTGTATTGGGTTGCCTCTCATCTAAAGAATAATTCCTTGTTCGTCCTGGTT 645
Query 672 TACTTCAACTTTTCCAATGAAAAAGTCCACAAGTTTTCTGATCTACCATGTGGAGAGAAC 731
|||| ||| |||||||||||||| ||| ||||||||||||||||||||||||| ||||||
Sbjct 646 TACTACAATTTTTCCAATGAAAAGGTCTACAAGTTTTCTGATCTACCATGTGGGGAGAAC 705
Query 732 CATCAT-AGCGATGTTATTGTTCTTAGGCTTTTTATGGAAGATCGGCTATCGTTGTTAAA 790
|||||| | ||||||| ||||||||||| |||||| |||||||||||| |||||||||||
Sbjct 706 CATCATCA-CGATGTTCTTGTTCTTAGGATTTTTAGGGAAGATCGGCTTTCGTTGTTAAA 764
Query 791 GCAATGCCATCTAACAAAGAAGATTGAGATTTGGGTGACCAAGAACAAGATTAAAAACTG 850
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 765 GCAATGCCATCTAACAAAGAAGATTGAGATTTGGGTGACCAAGAACAAGATTAGAAACTG 824
Query 851 C-CGTAGTGGAGATGTGGA---A------TGGATGAATTTCATGGAAGTGTCAACTCCTA 900
| | ||||||||||||||| | |||||||||||||||||||||||||||| ||
Sbjct 825 CTC-TAGTGGAGATGTGGATTCAGCGGAATGGATGAATTTCATGGAAGTGTCAACTCTTA 883
Query 901 ACTTGCCGGGTTTAGTAAAGCCAAGTTACTTCATCGACCATAAAAAGCTCGTTGTGTGTT 960
||||||||| ||||||| | |||||||||||||||||| |||||||||||||||||||||
Sbjct 884 ACTTGCCGGTTTTAGTACACCCAAGTTACTTCATCGACGATAAAAAGCTCGTTGTGTGTT 943
Query 961 CTTGCGACGAAACTGGCCAAGCTTGGATCTATGTTATGGGGGACAATAAGTTGATCAGTA 1020
|||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 944 CTTGCGACCAAACTGGCCAAGCTTGGATCTATGTTGTGGGGGACAATAAGTTGATCAGTA 1003
Query 1021 AAATTCAAATAGATTCTGTGGTTGATCTCTGGCCTTTGCATTGTACCTGTTTTCCC-AGT 1079
|||||||||||||||||||||||| || ||||||||||||||||| || ||||||| |||
Sbjct 1004 AAATTCAAATAGATTCTGTGGTTGGTCCCTGGCCTTTGCATTGTAGCT-TTTTCCCCAGT 1062
Query 1080 TTGGTCCCGGTACCTCGAAGTCGAAGTCAAACTAAAGAAGCAGCATTACAAGTTTGA 1136
|||||| | |||||||||||| || | ||||| ||||||||||||||||||||
Sbjct 1063 TTGGTCTCAATACCTCGAAGTC-AA---A--CTAAAAAAGCAGCATTACAAGTTTGA 1113
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56827016940
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5