BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg923036 Length=1162 Score E Sequences producing significant alignments: (Bits) Value AT3G16590.1 | Symbols: | F-box and associated interaction doma... 147 3e-34 > AT3G16590.1 | Symbols: | F-box and associated interaction domains-containing protein | chr3:5649932-5651056 REVERSE LENGTH=1125 Length=1125 Score = 147 bits (79), Expect = 3e-34 Identities = 126/148 (85%), Gaps = 6/148 (4%) Strand=Plus/Plus Query 44 GGAGTTAGAGGAAGAGATACTTTTTCGTGTTCCACCTTTACCTCTCACTCGCTTGAGAAC 103 |||||| ||||| ||||||||||| |||||||||||| || ||||||| ||||| ||||| Sbjct 21 GGAGTTGGAGGATGAGATACTTTTGCGTGTTCCACCTCTATCTCTCACACGCTTTAGAAC 80 Query 104 CGTTTGCAAACGATGGAACACACTTTTCAACGAAAAGAGATTTATTAGA-AACCACTTGG 162 |||||||||||||||||||||||||||||||| ||||||| || | | || ||||||| Sbjct 81 AGTTTGCAAACGATGGAACACACTTTTCAACGATCAGAGATTCATCA-ACAATCACTTGG 139 Query 163 CT--CGTGCCTATCCTCAATTCATCTTA 188 || ||| || |||||| ||||| ||| Sbjct 140 CTTGCGT-CCG-TCCTCAGTTCATATTA 165 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 57027819120 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5