BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg923036

Length=1162
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G16590.1 | Symbols:  | F-box and associated interaction doma...   147    3e-34


> AT3G16590.1 | Symbols:  | F-box and associated interaction domains-containing 
protein | chr3:5649932-5651056 REVERSE LENGTH=1125
Length=1125

 Score =  147 bits (79),  Expect = 3e-34
 Identities = 126/148 (85%), Gaps = 6/148 (4%)
 Strand=Plus/Plus

Query  44   GGAGTTAGAGGAAGAGATACTTTTTCGTGTTCCACCTTTACCTCTCACTCGCTTGAGAAC  103
            |||||| ||||| ||||||||||| |||||||||||| || ||||||| ||||| |||||
Sbjct  21   GGAGTTGGAGGATGAGATACTTTTGCGTGTTCCACCTCTATCTCTCACACGCTTTAGAAC  80

Query  104  CGTTTGCAAACGATGGAACACACTTTTCAACGAAAAGAGATTTATTAGA-AACCACTTGG  162
             ||||||||||||||||||||||||||||||||  ||||||| || | | || |||||||
Sbjct  81   AGTTTGCAAACGATGGAACACACTTTTCAACGATCAGAGATTCATCA-ACAATCACTTGG  139

Query  163  CT--CGTGCCTATCCTCAATTCATCTTA  188
            ||  ||| ||  |||||| ||||| |||
Sbjct  140  CTTGCGT-CCG-TCCTCAGTTCATATTA  165



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 57027819120


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5