BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg923037 Length=193 Score E Sequences producing significant alignments: (Bits) Value AT1G47395.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 276 6e-74 > AT1G47395.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G47400.1); Has 9 Blast hits to 9 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 9; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:17383034-17383408 FORWARD LENGTH=375 Length=375 Score = 276 bits (149), Expect = 6e-74 Identities = 176/189 (93%), Gaps = 1/189 (1%) Strand=Plus/Plus Query 1 TCTTCATAAC-CAACaaaaaaaTGATGTCTTTCGTTGCTAACTTGGTCATCAAAAGTTTT 59 |||||||||| || |||||||||||||||| ||||||||||||||||||||| |||||| Sbjct 63 TCTTCATAACAGAAAAAAAAAATGATGTCTTACGTTGCTAACTTGGTCATCAAGAGTTTT 122 Query 60 TACCGTGCTTCCGCGGTGTATGTTGAAGATGTGGTGGATAGCTCTCGAGCGACATGTGTT 119 |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 123 GACCGTGCTTCCGTGGTGTATGTTGAAGATGTGGTGGATAGCTCTCGAGCGACATGTGTT 182 Query 120 GAGAATGGTGGTGACGACGATGACAGTGGCTATGATTACGCTCCTGCTGCATGATTCTCT 179 |||||||||||||| ||||||||||||||||||||||| ||||||||||| ||||| ||| Sbjct 183 GAGAATGGTGGTGATGACGATGACAGTGGCTATGATTATGCTCCTGCTGCGTGATTGTCT 242 Query 180 CATCTTAGT 188 | | ||||| Sbjct 243 CCTATTAGT 251 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 8551229670 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5