BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg923038
Length=193
Score E
Sequences producing significant alignments: (Bits) Value
AT1G47395.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 259 6e-69
> AT1G47395.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: endomembrane system; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT1G47400.1); Has
9 Blast hits to 9 proteins in 2 species: Archae - 0; Bacteria
- 0; Metazoa - 0; Fungi - 0; Plants - 9; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink). | chr1:17383034-17383408
FORWARD LENGTH=375
Length=375
Score = 259 bits (140), Expect = 6e-69
Identities = 161/171 (94%), Gaps = 1/171 (1%)
Strand=Plus/Plus
Query 8 AACA-AACaaaaaaaTGATGTATTTCTTTGCTAACTTGGTCAGCAAGAGTTTTGACCGTG 66
|||| || ||||||||||||| || | ||||||||||||||| |||||||||||||||||
Sbjct 70 AACAGAAAAAAAAAATGATGTCTTACGTTGCTAACTTGGTCATCAAGAGTTTTGACCGTG 129
Query 67 CTTCTGCGGTGTATGTTGAAGATGTGGTGGATAGCTCTCGAGCGACATGTGTTGAGAATG 126
|||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 130 CTTCCGTGGTGTATGTTGAAGATGTGGTGGATAGCTCTCGAGCGACATGTGTTGAGAATG 189
Query 127 GTGGTGACGACGATGACAGTGGCTACGATTATGCTCCTGCTGCGTGATTGT 177
||||||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct 190 GTGGTGATGACGATGACAGTGGCTATGATTATGCTCCTGCTGCGTGATTGT 240
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 8551229670
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5