BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg923039
Length=193
Score E
Sequences producing significant alignments: (Bits) Value
AT1G47400.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 278 2e-74
AT1G47395.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 239 8e-63
> AT1G47400.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT1G47395.1);
Has 11 Blast hits to 11 proteins in 2 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 11; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:17385717-17386186
FORWARD LENGTH=470
Length=470
Score = 278 bits (150), Expect = 2e-74
Identities = 177/190 (93%), Gaps = 2/190 (1%)
Strand=Plus/Plus
Query 1 ATAACCAACaaaaaaaaTCAATGATGTCTTTTGTCGCAAACTTGGCCATCAAGAG-TTTG 59
||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 82 ATATCCAACAAAAAATATCAATGATGTCTTTTGTCGCAAACTTGGCCATCAAGAGATTTG 141
Query 60 GACCGTGCTTCCGCGGTGTATGTTGAAGATGTGGTGGATAGTTCTCGAGTGGCATATGGT 119
||| ||||||| | |||||||||||||||||||| ||||||||||||||||||||| ||
Sbjct 142 -ACCATGCTTCCACCGTGTATGTTGAAGATGTGGTAGATAGTTCTCGAGTGGCATATAGT 200
Query 120 GAGAATGGTGGTGATGACGATGACACTGGCTACGATTATGCTCCTGCTGCGTGATTGTCT 179
||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||| |
Sbjct 201 GAGAATGGTGGTGATGACGATGACAGTGGCTATGATTATGCTCCTGCTGCGTGATTGTTT 260
Query 180 CCAATTAGTA 189
|| |||||||
Sbjct 261 CCTATTAGTA 270
> AT1G47395.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: endomembrane system; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT1G47400.1); Has
9 Blast hits to 9 proteins in 2 species: Archae - 0; Bacteria
- 0; Metazoa - 0; Fungi - 0; Plants - 9; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink). | chr1:17383034-17383408
FORWARD LENGTH=375
Length=375
Score = 239 bits (129), Expect = 8e-63
Identities = 166/184 (90%), Gaps = 2/184 (1%)
Strand=Plus/Plus
Query 7 AACa-aaaaaaaTCAATGATGTCTTTTGTCGCAAACTTGGCCATCAAGAGTTTGGACCGT 65
|||| ||||||| ||||||||||| || || ||||||| |||||||||||| ||||||
Sbjct 70 AACAGAAAAAAA-AAATGATGTCTTACGTTGCTAACTTGGTCATCAAGAGTTTTGACCGT 128
Query 66 GCTTCCGCGGTGTATGTTGAAGATGTGGTGGATAGTTCTCGAGTGGCATATGGTGAGAAT 125
||||||| ||||||||||||||||||||||||||| ||||||| | ||| || |||||||
Sbjct 129 GCTTCCGTGGTGTATGTTGAAGATGTGGTGGATAGCTCTCGAGCGACATGTGTTGAGAAT 188
Query 126 GGTGGTGATGACGATGACACTGGCTACGATTATGCTCCTGCTGCGTGATTGTCTCCAATT 185
||||||||||||||||||| |||||| ||||||||||||||||||||||||||||| |||
Sbjct 189 GGTGGTGATGACGATGACAGTGGCTATGATTATGCTCCTGCTGCGTGATTGTCTCCTATT 248
Query 186 AGTA 189
||||
Sbjct 249 AGTA 252
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 8551229670
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5