BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg923039 Length=193 Score E Sequences producing significant alignments: (Bits) Value AT1G47400.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 278 2e-74 AT1G47395.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 239 8e-63 > AT1G47400.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G47395.1); Has 11 Blast hits to 11 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 11; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:17385717-17386186 FORWARD LENGTH=470 Length=470 Score = 278 bits (150), Expect = 2e-74 Identities = 177/190 (93%), Gaps = 2/190 (1%) Strand=Plus/Plus Query 1 ATAACCAACaaaaaaaaTCAATGATGTCTTTTGTCGCAAACTTGGCCATCAAGAG-TTTG 59 ||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| Sbjct 82 ATATCCAACAAAAAATATCAATGATGTCTTTTGTCGCAAACTTGGCCATCAAGAGATTTG 141 Query 60 GACCGTGCTTCCGCGGTGTATGTTGAAGATGTGGTGGATAGTTCTCGAGTGGCATATGGT 119 ||| ||||||| | |||||||||||||||||||| ||||||||||||||||||||| || Sbjct 142 -ACCATGCTTCCACCGTGTATGTTGAAGATGTGGTAGATAGTTCTCGAGTGGCATATAGT 200 Query 120 GAGAATGGTGGTGATGACGATGACACTGGCTACGATTATGCTCCTGCTGCGTGATTGTCT 179 ||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||| | Sbjct 201 GAGAATGGTGGTGATGACGATGACAGTGGCTATGATTATGCTCCTGCTGCGTGATTGTTT 260 Query 180 CCAATTAGTA 189 || ||||||| Sbjct 261 CCTATTAGTA 270 > AT1G47395.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G47400.1); Has 9 Blast hits to 9 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 9; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:17383034-17383408 FORWARD LENGTH=375 Length=375 Score = 239 bits (129), Expect = 8e-63 Identities = 166/184 (90%), Gaps = 2/184 (1%) Strand=Plus/Plus Query 7 AACa-aaaaaaaTCAATGATGTCTTTTGTCGCAAACTTGGCCATCAAGAGTTTGGACCGT 65 |||| ||||||| ||||||||||| || || ||||||| |||||||||||| |||||| Sbjct 70 AACAGAAAAAAA-AAATGATGTCTTACGTTGCTAACTTGGTCATCAAGAGTTTTGACCGT 128 Query 66 GCTTCCGCGGTGTATGTTGAAGATGTGGTGGATAGTTCTCGAGTGGCATATGGTGAGAAT 125 ||||||| ||||||||||||||||||||||||||| ||||||| | ||| || ||||||| Sbjct 129 GCTTCCGTGGTGTATGTTGAAGATGTGGTGGATAGCTCTCGAGCGACATGTGTTGAGAAT 188 Query 126 GGTGGTGATGACGATGACACTGGCTACGATTATGCTCCTGCTGCGTGATTGTCTCCAATT 185 ||||||||||||||||||| |||||| ||||||||||||||||||||||||||||| ||| Sbjct 189 GGTGGTGATGACGATGACAGTGGCTATGATTATGCTCCTGCTGCGTGATTGTCTCCTATT 248 Query 186 AGTA 189 |||| Sbjct 249 AGTA 252 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 8551229670 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5