BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg923049
Length=1046
Score E
Sequences producing significant alignments: (Bits) Value
AT1G47510.1 | Symbols: AT5PTASE11, 5PTASE11 | inositol polyphos... 1668 0.0
> AT1G47510.1 | Symbols: AT5PTASE11, 5PTASE11 | inositol polyphosphate
5-phosphatase 11 | chr1:17435601-17438396 REVERSE LENGTH=1495
Length=1495
Score = 1668 bits (903), Expect = 0.0
Identities = 999/1046 (96%), Gaps = 4/1046 (0%)
Strand=Plus/Plus
Query 1 CCTTTTA-AGGAGAAACACTGCATGCAGACAATGGGGAATACGAATTCGATGTGTGGGCT 59
||||||| | ||| |||||| ||||| |||||||||||||| |||||||||||||||| |
Sbjct 80 CCTTTTACA-GAGTAACACTACATGCCGACAATGGGGAATAAGAATTCGATGTGTGGGTT 138
Query 60 AAAAAGGTTTTCAAACTACAAGAAGTCTCCGATAGGTTCGTTTGCAAAAAACTCATCATC 119
|||||||||| | |||||||||||||||||||| ||||| ||||| ||||||||||||||
Sbjct 139 AAAAAGGTTTCCGAACTACAAGAAGTCTCCGATCGGTTCATTTGCGAAAAACTCATCATC 198
Query 120 TCACGATGGTATTAAAACAATTGAAGCTGTTAAGAGTTGCAGTTTTTCTAGAAAAGCAGA 179
|||||| |||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 199 TCACGACGGTATTAAAACAATCGAAGCTGTTAACAGTTGCAGTTTTTCTAGAAAAGCAGA 258
Query 180 TCTTTGCATCCGTATTATCACTTGGAACATGAATGGAAAGGTTTCGTATGAGGATTTAGT 239
||||||||||||||| ||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 259 TCTTTGCATCCGTATCATCACATGGAACATGAATGGAAATGTTTCGTATGAGGATTTAGT 318
Query 240 TGAGCTTGTTGGCAAAGAAAGGAAGTTCGATTTGCTTGTCGTTGGCTTGCAAGAGGCTCC 299
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 319 TGAGCTTGTTGGCAAAGAAAGGAAGTTCGATTTGCTTGTCGTTGGCTTGCAAGAAGCTCC 378
Query 300 TAAAACAAACGTTGATCAACTTTTGCAAACAGCTTCATCTCCAACTCACGAGCTTCTTGG 359
||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 379 CAAAGCAAACGTTGATCAACTTTTGCAGACAGCTTCATCTCCAACTCACGAGCTTCTTGG 438
Query 360 AAAGGCGAAATTGCAATCGATCCAGTTATATTTGTTTGGGCCAAAGAATTCACATACATT 419
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 439 GAAGGCGAAATTGCAATCGGTCCAGTTATATTTGTTTGGGCCAAAGAATTCACATACATT 498
Query 420 AGTAAAAGAATTAAAGACAGAGAGACATTCAGTAGGAGGATGTGGAGGTTTAATAGGAAG 479
|||||||||||||||| |||||||| |||| |||||||||||||||||||||||||||||
Sbjct 499 AGTAAAAGAATTAAAGGCAGAGAGATATTCGGTAGGAGGATGTGGAGGTTTAATAGGAAG 558
Query 480 aaaaaaaGGAGCCGTGGCTATTCGTATTAACTACGATGATATCAAAATGGTTTTTATCTC 539
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 559 AAAAAAAGGAGCCGTGGCTATTCGTATTAACTACGATGACATCAAAATGGTTTTTATCTC 618
Query 540 TTGCCATCTCTCTGCTCATGCAAAGAAAGTGGATCAAAGAAATACAGAGTTAAGACACAT 599
|||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 619 TTGCCATCTCTCTGCTCATGCAAAAAAAGTGGATCAAAGAAATACGGAGTTAAGACACAT 678
Query 600 AGCAAATTCACTATTA-CATAGAGACAAAAAGAAACGTGACCTCACTGTTTGGCTTGGAG 658
|||||||||||||||| || |||||||||| |||||||||||| ||||||||||| ||||
Sbjct 679 AGCAAATTCACTATTACCA-AGAGACAAAAGGAAACGTGACCTTACTGTTTGGCTAGGAG 737
Query 659 ATCTAAATTACAGGATCCAAGATGCCTCTAACCGTCCTGTTCGATCTCTTATCCAAAACC 718
|||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 738 ATCTAAATTACAGGATCCAAGATGTCTCTAACCATCCTGTTCGATCTCTTATCCAAAACC 797
Query 719 ATCTTCAATCTGTTCTTGTGAGCAAAGATCAACTCTTGCAAGAAGCGGAGAGAGGCGAAA 778
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 798 ATCTTCAATCTGTTCTTGTGAGTAAAGATCAACTCTTGCAAGAAGCGGAGAGAGGCGAAA 857
Query 779 TATTCAAAGGTTACTCTGAAGGAACTTTAGGGTTTAAACCGACCTACAAATACAATGTAG 838
|||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 858 TATTCAAAGGTTACTCTGAAGGAACTTTAGGGTTTAAACCAACCTACAAGTACAATGTAG 917
Query 839 GAAGCAGCGACTATGATACAAGCCATAAGATTAGGGTTCCAGCTTGGACAGATAGGATCT 898
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 918 GAAGCAGCGACTATGATACAAGCCATAAGATCAGGGTTCCAGCTTGGACAGATAGGATCT 977
Query 899 TATTCAAGATCCAAAATACTGATAATATTCAAGCAACTCTTCACTCTTATGATTCCATAG 958
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 978 TATTCAAGATCCAAGATACTGATAATATTCAAGCAACTCTTCACTCTTATGATTCCATAG 1037
Query 959 ACCAAGTATATGGTTCCGATCATAAGCCTGTCAAAGCGGATCTTTGCTTGAAGTGGGTCA 1018
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1038 ACCAAGTATATGGTTCTGATCATAAGCCTGTCAAAGCGGATCTTTGCTTGAAGTGGGTCA 1097
Query 1019 ACAATTAAATAGATGGATAAAATTTA 1044
||| ||||||| ||| ||| ||||||
Sbjct 1098 ACAGTTAAATAAATGCATACAATTTA 1123
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51289064087
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5