BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg923056
Length=1924
Score E
Sequences producing significant alignments: (Bits) Value
AT1G47550.2 | Symbols: SEC3A | exocyst complex component sec3A ... 935 0.0
AT1G47560.1 | Symbols: SEC3B | exocyst complex component sec3B ... 902 0.0
> AT1G47550.2 | Symbols: SEC3A | exocyst complex component sec3A
| chr1:17457122-17464386 FORWARD LENGTH=3206
Length=3206
Score = 935 bits (506), Expect = 0.0
Identities = 616/670 (92%), Gaps = 3/670 (0%)
Strand=Plus/Plus
Query 1254 ATGGGTGTCTTGCCTTATATTCCAAGATTTGCAGCAGTTGCTACTCGTATGGAACAGTAC 1313
|||||||||||||| ||||||||||||||||||||| ||||||||||||||||||| |||
Sbjct 2066 ATGGGTGTCTTGCCATATATTCCAAGATTTGCAGCACTTGCTACTCGTATGGAACAATAC 2125
Query 1314 ATACAAGGGCAATCTAGAGATTTGGTTGATCAGGCATACACGAAATATGTAAGCATAATG 1373
||||||||||||||||||||||||||||||||||||||||| |||| ||| |||||||||
Sbjct 2126 ATACAAGGGCAATCTAGAGATTTGGTTGATCAGGCATACACAAAATTTGTGAGCATAATG 2185
Query 1374 TTCGTGACCCTCGAGAAGATTGCCCAGCAAGATCCTAAATATGCAGATATTCTCCTTTTA 1433
|| |||||||||||||| |||||||| ||||||||||||||||||||||||||||| |||
Sbjct 2186 TTTGTGACCCTCGAGAAAATTGCCCAACAAGATCCTAAATATGCAGATATTCTCCTGTTA 2245
Query 1434 GAAAACTATGCTGCTTTCCAAAATAGCTTTTATGAACTGGCTGATGTTGTACCCACATTA 1493
||||||||||||||||| || |||||| | ||||| |||||| ||||||| || || |||
Sbjct 2246 GAAAACTATGCTGCTTTTCAGAATAGCCTGTATGACCTGGCTAATGTTGTGCCGACTTTA 2305
Query 1494 GCCAAGTTCTATCATCAGGCAAGTGAAGCATATGAACAAGCTTGTACGCGCCGCATTAGC 1553
|||||||| ||||| ||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 2306 GCCAAGTTTTATCACCAGGCAAGTGAAGCATATGAACAAGCTTGTACGCGCCACATTAGC 2365
Query 1554 ATGATAATTTACTACCAATTCGAAAAACTTTTCCAATTTTCTaaaaaaaTTGAGGATTTC 1613
|||||||||||||| |||||||||| ||||||||| ||| ||||||| ||||||||||||
Sbjct 2366 ATGATAATTTACTATCAATTCGAAAGACTTTTCCAGTTTGCTAAAAAGATTGAGGATTTC 2425
Query 1614 ATGTATACTATCACCCCTGAAGAGATACCATTCCAGCGTGGTTTGTCGAAAA-AGGAACT 1672
||||||||||||||||||||||||||||||||||||| |||||| |||||| || ||||
Sbjct 2426 ATGTATACTATCACCCCTGAAGAGATACCATTCCAGCTTGGTTTATCGAAAGTAG-AACT 2484
Query 1673 CCGAAAGATGTTAAAATCAACCCTGTCAGGGGCGGACAAATCGATTGCAGCAATGTATAA 1732
||| |||||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 2485 CCGGAAGATGTTAAAATCAAGCCTGTCAGGGGTGGACAAATCGATTGCAGCAATGTATAA 2544
Query 1733 ACAGTTGCAGAAGAATTTAACATTGGTGGAGTTGCTACCACCGTTGTGGGATAAATGCAA 1792
| |||||||||||||| || ||| | ||||||||||||| |||||||||||||||||||
Sbjct 2545 AAAGTTGCAGAAGAATCTAGCATCAGAGGAGTTGCTACCATCGTTGTGGGATAAATGCAA 2604
Query 1793 GAAGGAATTTCTGGACAAGTACGAGAGCTTCGTGGAACTTGTAGCCAAAGTTTACCCGAA 1852
|||||| ||||||||||||||||||||||||||| | || |||||||||||||| ||||
Sbjct 2605 GAAGGAGTTTCTGGACAAGTACGAGAGCTTCGTGCAGCTCGTAGCCAAAGTTTATCCGAG 2664
Query 1853 TGAGAACGTTCCTGGGGTTACTGAAATGAGGGGACTTTTGGCTTCCATGTaaaaaaaaCA 1912
||| ||||||||||| || ||||||||||| |||||| ||||||||||||||||||| ||
Sbjct 2665 TGAAAACGTTCCTGGAGTAACTGAAATGAGAGGACTTCTGGCTTCCATGTAAAAAAA-CA 2723
Query 1913 AGTGATAGAA 1922
||||||||||
Sbjct 2724 AGTGATAGAA 2733
Score = 815 bits (441), Expect = 0.0
Identities = 519/557 (93%), Gaps = 4/557 (1%)
Strand=Plus/Plus
Query 450 GTAAAAGAGAAACGAGCAGAACTAGATACATTAAAAGCTACTTTTGTAAGGAGAGCTTCA 509
|||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct 1160 GTAAAAGAGAAACGAGCAGAACTAGAAAAATTAAAAGCTACTTTTGTAAGGAGAGCTTCG 1219
Query 510 GAGTTCTTGAGAAACTACTTTGTTAGTCTGGTAGATTTCATTGTTATCGACAAAAGCTAC 569
|||||||||||||||||||||| |||| ||||||||||||| || | |||||||||||||
Sbjct 1220 GAGTTCTTGAGAAACTACTTTGCTAGTTTGGTAGATTTCATGGTCAGCGACAAAAGCTAC 1279
Query 570 TTTTCTCAGAGAGGGCAGCTGAAGAGGCCTGACCATGCAGATTTGCGGTACAAATGGAGA 629
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 1280 TTTTCTCAGAGAGGGCAGCTGAAGAGGCCTGACCATGCTGATTTGCGGTACAAATGCAGA 1339
Query 630 ACATATGCTCGTCTTTTGCAACATTTAAAGGGTCTTGATAAGAATTGTTTGGGTCCATTG 689
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1340 ACATATGCTCGTCTTTTGCAACATTTAAAGGGTCTTGATAAGAATTGTTTGGGACCATTG 1399
Query 690 AGAAAAGCATACTGCAGCTCAATGAACTTGCTCCTTCGTCGGGAGGCTCGTGAGTTCACG 749
|||||||||||||||||||| ||||||||||||||||||| ||||||||||| ||| ||
Sbjct 1400 AGAAAAGCATACTGCAGCTCCCTGAACTTGCTCCTTCGTCGAGAGGCTCGTGAATTCGCG 1459
Query 750 AATGAGCTTCGTGCAAGCACAAAAGTATCCCAAAATCCCACTGTCTGGCTAGAAGAATCT 809
||||||||||||||||||||||||||||| | |||||| |||||||||||||||| ||||
Sbjct 1460 AATGAGCTTCGTGCAAGCACAAAAGTATCACGAAATCCTACTGTCTGGCTAGAAGGATCT 1519
Query 810 ACGGGCTCTAATCAGAATGCAAACACTGACACCTCTGCAGTGGCAGATGCTTATGCCAAA 869
||||| |||| ||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1520 ACGGGTTCTAGTCAGAATGCAAACACTGACACCTCTGCAGTGTCAGATGCTTATGCCAAG 1579
Query 870 ATGCTAACAACATTCATCCCTCTTCTTGTAGATGAGAGTTC-TTTTCTTGCGCACTTCAT 928
|||||||||| ||||||||| |||||||||||||||||||| |||| |||||||||||||
Sbjct 1580 ATGCTAACAATATTCATCCCGCTTCTTGTAGATGAGAGTTCCTTTT-TTGCGCACTTCAT 1638
Query 929 GTGCTTTGAGGTACCGGCTCTTACTCCTCCTGGAGGTGCTG-CTAGTTATAACAAAAACC 987
||||||||||||||| |||||| |||||||||||||||||| | | | |||| |||| ||
Sbjct 1639 GTGCTTTGAGGTACCTGCTCTTGCTCCTCCTGGAGGTGCTGGCAA-TGATAAGAAAAGCC 1697
Query 988 GGTCCAACAATGATGAT 1004
|||||||||||| |||
Sbjct 1698 AGTCCAACAATGACGAT 1714
Score = 294 bits (159), Expect = 2e-78
Identities = 175/182 (96%), Gaps = 3/182 (2%)
Strand=Plus/Plus
Query 272 AGAAACTCG--A-AACAAGTTAGAGATGCAGTCTGTAAACAATAAAGCTCTCATTGAGGA 328
||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 922 AGAAACTCGAAACAACAAGTTAGAGATGCAGTCTGTAAACAATAAAGCTCTCATTGAGGA 981
Query 329 ACTTGATGAAGTTATTGAGAGTCTGTGTGTGCCTTCTGAGTATGCAGCATCCCTAACAGG 388
||||||| ||||||||||||| ||| ||||||||||||||||||||||||||||||||||
Sbjct 982 ACTTGATAAAGTTATTGAGAGACTGCGTGTGCCTTCTGAGTATGCAGCATCCCTAACAGG 1041
Query 389 AGGCTCATTTGATGAAGCAGACATGCTCCAGAATATTGATGCTTGCGAGTGGTTAGCCAA 448
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1042 AGGCTCATTTGATGAAGCAGACATGCTCCAGAATATTGAGGCTTGCGAGTGGTTAGCCAA 1101
Query 449 AG 450
||
Sbjct 1102 AG 1103
Score = 263 bits (142), Expect = 5e-69
Identities = 215/248 (87%), Gaps = 14/248 (6%)
Strand=Plus/Plus
Query 1017 GACAAGAAAACTGGTCAAAACTC-CCTGGACCTGAAGGCATTGAATGAATCTATTCAAGA 1075
||||||||| ||||| ||||||| || ||||||| |||||||||||| ||| |||||||
Sbjct 1760 GACAAGAAACCTGGTAAAAACTCTCC-AGACCTGACGGCATTGAATGAGTCTCTTCAAGA 1818
Query 1076 TTTACTTGATAGTATTCAAGAGGAGTTCTTTGTTGTTATTGACTGGGCATATAAAATAGA 1135
|||||||||| ||||||| ||||| |||| || |||| ||||||||||||||||||||||
Sbjct 1819 TTTACTTGATGGTATTCAGGAGGATTTCTATGCTGTTGTTGACTGGGCATATAAAATAGA 1878
Query 1136 TCCTCTACTGTGTATATCAATGCATGGTATAACT----G--A---A-C--GTCAGAAAGC 1183
|| |||| |||||| |||||||||||||||||| | | | | ||||||||||
Sbjct 1879 CCCCCTACGGTGTATTTCAATGCATGGTATAACTGAACGTTATCTATCTGGTCAGAAAGC 1938
Query 1184 CGATACTTCAGGATTTGTTCGCCTTTTGCTTGGAGATCTGGAGTCGAGAGTTTCTATGCA 1243
||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1939 TGATGCTGCAGGATTTGTTCGCCTTTTGCTTGGAGATCTGGAGTCGAGAGTTTCTATGCA 1998
Query 1244 ATTCAGCC 1251
||||||||
Sbjct 1999 ATTCAGCC 2006
> AT1G47560.1 | Symbols: SEC3B | exocyst complex component sec3B
| chr1:17466751-17473294 FORWARD LENGTH=2768
Length=2768
Score = 902 bits (488), Expect = 0.0
Identities = 613/674 (91%), Gaps = 6/674 (1%)
Strand=Plus/Plus
Query 1254 ATGGGTGTCTTGCCTTATATTCCAAGATTTGCAGCAGTTGCTACTCGTATGGAACAGTAC 1313
|||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 2014 ATGGGTGTCTTGCCATATATTCCAAGATTTGCAGCACTTGCTACTCGTATGGAACAGTAC 2073
Query 1314 ATACAAGGGCAATCTAGAGATTTGGTTGATCAGGCATACACGAAATATGTAAGCATAATG 1373
|||||||||||||||||| |||||||||||||||| ||||| |||| ||| |||||| ||
Sbjct 2074 ATACAAGGGCAATCTAGAAATTTGGTTGATCAGGCGTACACAAAATTTGTGAGCATACTG 2133
Query 1374 TTCGTGACCCTCGAGAAGATTGCCCAGCAAGATCCTAAATATGCAGATATTCTCCTTTTA 1433
|| |||||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 2134 TTTGTGACCCTCGAGAAAATTGCCCAACAAGATCCTAAATATGCAGATATTCTCCTTTTG 2193
Query 1434 GAAAACTATGCTGCTTTCCAAAATAGCTT-TTATGAACTGGCTGATGTTGTACCCACATT 1492
||||||||||||||||| |||| | || | || ||| |||||| ||||||| || || ||
Sbjct 2194 GAAAACTATGCTGCTTTTCAAACTTGCCTGTT-TGACCTGGCTAATGTTGTGCCGACTTT 2252
Query 1493 AGCCAAGTTCTATCATCAGGCAAGTG-AAGCATATGAACAAGCTTGTACGCGCCGCATTA 1551
||||||||||||| | ||||||| || ||||||||||||||||||||||||||| |||||
Sbjct 2253 AGCCAAGTTCTATGACCAGGCAA-TGGAAGCATATGAACAAGCTTGTACGCGCCACATTA 2311
Query 1552 GCATGATAATTTACTACCAATTCGAAAAACTTTTCCAATTTTCTaaaaaaaTTGAGGATT 1611
|||||||||||||||| |||||||||| |||||||| ||| |||||| ||| |||||
Sbjct 2312 GCATGATAATTTACTATCAATTCGAAAGACTTTTCCTGTTTGATAAAAAGATTAAGGATC 2371
Query 1612 TCATGTATACTATCACCCCTGAAGAGATACCATTCCAGCGTGGTTTGTCGAAAAA-GGAA 1670
||||||||||||||||||||||||||||||||||||||| |||||| || |||| ||||
Sbjct 2372 TCATGTATACTATCACCCCTGAAGAGATACCATTCCAGCTTGGTTTATC-AAAAGTGGAA 2430
Query 1671 CTCCGAAAGATGTTAAAATCAACCCTGTCAGGGGCGGACAAATCGATTGCAGCAATGTAT 1730
||||| |||||||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 2431 CTCCGGAAGATGTTAAAATCAAGCCTGTCAGGGGTGGACAAATCGATTGCAGCAATGTAT 2490
Query 1731 AAACAGTTGCAGAAGAATTTAACATTGGTGGAGTTGCTACCACCGTTGTGGGATAAATGC 1790
||| ||||||||||||||||| ||| | ||||||||||||| |||||||||||||||||
Sbjct 2491 AAAAAGTTGCAGAAGAATTTAGCATCAGAGGAGTTGCTACCATCGTTGTGGGATAAATGC 2550
Query 1791 AAGAAGGAATTTCTGGACAAGTACGAGAGCTTCGTGGAACTTGTAGCCAAAGTTTACCCG 1850
|||||||| ||||||||||||||||||||||||||| | || ||||||||||||||||||
Sbjct 2551 AAGAAGGAGTTTCTGGACAAGTACGAGAGCTTCGTGCAGCTCGTAGCCAAAGTTTACCCG 2610
Query 1851 AATGAGAACGTTCCTGGGGTTACTGAAATGAGGGGACTTTTGGCTTCCATGTaaaaaaaa 1910
| ||| |||||||||||||| ||||||||||| |||||| ||||||||||||||||||||
Sbjct 2611 AGTGAAAACGTTCCTGGGGTAACTGAAATGAGAGGACTTCTGGCTTCCATGTAAAAAAAA 2670
Query 1911 CAAGTGATAGAACC 1924
|||||||| |||||
Sbjct 2671 CAAGTGATTGAACC 2684
Score = 782 bits (423), Expect = 0.0
Identities = 515/559 (92%), Gaps = 8/559 (1%)
Strand=Plus/Plus
Query 450 GTAAAAGAGAAACGAGCAGAACTAGATACATTAAAAGCTACTTTTGTAAGGAGAGCTTCA 509
|||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||
Sbjct 1111 GTAAAAGAGAAACGAGCAGAACTAGAAAAATTAAAAGCTACTTTTGTAAGGAGAGCTTCA 1170
Query 510 GAGTTCTTGAGAAACTACTTTGTTAGTCTGGTAGATTTCATTGTT-A-TCGACAAAAGCT 567
|||||||||||| ||||||||| ||||||||||||||||| ||| | | ||||||||||
Sbjct 1171 GAGTTCTTGAGAGACTACTTTGCTAGTCTGGTAGATTTCA-AGTTCAGT-GACAAAAGCT 1228
Query 568 ACTTTTCTCAGAGAGGGCAGCTGAAGAGGCCTGACCATGCAGATTTGCGGTACAAATGGA 627
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 1229 ACTTTTCTCAGAGAGGGCAGCTGAAGAGGCCTGACCATGCTGATTTGCGGTACAAATGCA 1288
Query 628 GAACATATGCTCGTCTTTTGCAACATTTAAAGGGTCTTGATAAGAATTGTTTGGGTCCAT 687
||||||||||||||||| |||||||||||||||||||| |||||||||||||||| ||||
Sbjct 1289 GAACATATGCTCGTCTTATGCAACATTTAAAGGGTCTTAATAAGAATTGTTTGGGACCAT 1348
Query 688 TGAGAAAAGCATACTGCAGCTCAATGAACTTGCTCCTTCGTCGGGAGGCTCGTGAGTTCA 747
|||||||||||||||||||||| ||||||||||||||||||| ||||||||||| |||
Sbjct 1349 TGAGAAAAGCATACTGCAGCTCCCTGAACTTGCTCCTTCGTCGAGAGGCTCGTGAATTCG 1408
Query 748 CGAATGAGCTTCGTGCAAGCACAAAAGTATCCCAAAATCCCACTGTCTGGCTAGAAGAAT 807
|||| |||||||||||||||||||||||||| | |||||| ||||| |||||||||| ||
Sbjct 1409 CGAAGGAGCTTCGTGCAAGCACAAAAGTATCACGAAATCCTACTGTTTGGCTAGAAGGAT 1468
Query 808 CTACGGGCTCTAATCAGAATGCAAACACTGACACCTCTGCAGTGGCAGATGCTTATGCCA 867
||||||| |||| ||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1469 CTACGGGTTCTAGTCAGAATGCAAACACTGACACCTCTGCAGTGTCAGATGCTTATGCCA 1528
Query 868 AAATGCTAACAACATTCATCCCTCTTCTTGTAGATGAGAGTTC-TTTTCTTGCGCACTTC 926
| ||| |||||| ||||||||| |||||||||||||||||||| |||| |||||||||||
Sbjct 1529 AGATGTTAACAATATTCATCCCGCTTCTTGTAGATGAGAGTTCCTTTT-TTGCGCACTTC 1587
Query 927 ATGTGCTTTGAGGTACCGGCTCTTACTCCTCCTGGAGGTGCTG-CTAGTTATAACAAAAA 985
||||||||||||||||| |||||| |||||||||||||||||| | | | |||| ||||
Sbjct 1588 ATGTGCTTTGAGGTACCTGCTCTTGCTCCTCCTGGAGGTGCTGGCAA-TGATAAGAAAAG 1646
Query 986 CCGGTCCAACAATGATGAT 1004
|| |||||||||||| |||
Sbjct 1647 CCAGTCCAACAATGACGAT 1665
Score = 285 bits (154), Expect = 1e-75
Identities = 164/169 (97%), Gaps = 0/169 (0%)
Strand=Plus/Plus
Query 282 AACAAGTTAGAGATGCAGTCTGTAAACAATAAAGCTCTCATTGAGGAACTTGATGAAGTT 341
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 886 AACAAGTTAGAGATGCAGTCTGTAAACAATAAAGCTCTCATTGAGGAACTTGATAAAGTT 945
Query 342 ATTGAGAGTCTGTGTGTGCCTTCTGAGTATGCAGCATCCCTAACAGGAGGCTCATTTGAT 401
|||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 946 ATTGAGAGACTGCGTGTGCCTTCTGAGTATGCAGCATCCCTAACAGGAGGCTCATTTGAT 1005
Query 402 GAAGCAGACATGCTCCAGAATATTGATGCTTGCGAGTGGTTAGCCAAAG 450
|||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 1006 GAAGCAGACATGCTTCAGAATATTGAGGCTTGCGAGTGGTTAGCCAAAG 1054
Score = 261 bits (141), Expect = 2e-68
Identities = 216/250 (86%), Gaps = 14/250 (6%)
Strand=Plus/Plus
Query 1017 GACAAGAAAACTGGTCAAAACTC-CCTGGACCTGAAGGCATTGAATGAATCTATTCAAGA 1075
||||||||| ||||| ||||||| || ||||||| |||||||||||||||| |||||||
Sbjct 1711 GACAAGAAACCTGGTAAAAACTCTCC-AGACCTGACGGCATTGAATGAATCTCTTCAAGA 1769
Query 1076 TTTACTTGATAGTATTCAAGAGGAGTTCTTTGTTGTTATTGACTGGGCATATAAAATAGA 1135
|||||||||| ||||||| ||||| |||| || |||| ||||||||||||||||||||||
Sbjct 1770 TTTACTTGATGGTATTCAGGAGGATTTCTATGCTGTTGTTGACTGGGCATATAAAATAGA 1829
Query 1136 TCCTCTACTGTGTATATCAATGCATGGTAT-----AAC-TGA---A-C--GTCAGAAAGC 1183
|| |||| || |||||||||||||||||| ||| | | | | ||||||||||
Sbjct 1830 CCCCCTACGGTCTATATCAATGCATGGTATAACCGAACGTTATCTATCTGGTCAGAAAGC 1889
Query 1184 CGATACTTCAGGATTTGTTCGCCTTTTGCTTGGAGATCTGGAGTCGAGAGTTTCTATGCA 1243
||| || ||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1890 TGATGCTGCAGGATTTGTTCGCCTTTTGCTTGGAGATCTGGAGTCGAGAATTTCTATGCA 1949
Query 1244 ATTCAGCCAT 1253
||||||||||
Sbjct 1950 ATTCAGCCAT 1959
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 95280634410
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5