BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg923061
Length=781
Score E
Sequences producing significant alignments: (Bits) Value
AT3G02700.1 | Symbols: | NC domain-containing protein-related ... 283 2e-75
> AT3G02700.1 | Symbols: | NC domain-containing protein-related
| chr3:581541-582949 REVERSE LENGTH=1081
Length=1081
Score = 283 bits (153), Expect = 2e-75
Identities = 428/556 (77%), Gaps = 38/556 (7%)
Strand=Plus/Plus
Query 23 GATGGGATTACTCTCAAACCAAATCTCCAGAGAGAC-AT-TGAAGCCTGGAGATCACATC 80
||||||||| || || || |||||||| |||||| || |||| || || |||||||||
Sbjct 136 GATGGGATTCCTTTCCAATAAAATCTCC--AGAGACGATGTGAAACCAGGCGATCACATC 193
Query 81 TACTCATGGCGT-AACGCTTATACCTACTCTCACCACGGAATCTATGTAGGCGAT-GAGA 138
|| ||||||||| || || || | ||| |||| ||||||||||||||||| || || |
Sbjct 194 TATTCATGGCGTCAA-GCCTACATTTACGCTCATCACGGAATCTATGTAGGTAATGGACA 252
Query 139 AGGTGATA-CATTTCACTCGTGGAGGTGGTCTGGAAACCGGAACCGGGACTTTCCTGGAC 197
| || | | ||||| |||||||| | ||||| || || ||||| ||||||||| |||||
Sbjct 253 A-GTCA-ACCATTTTACTCGTGGTGATGGTCAAGAGACTGGAACTGGGACTTTCTTGGAC 310
Query 198 AAGTTCATCGCTAGTTGTGT-TCCGAATCATGGAGGAGACAACAACCCGTGTCCCAAGTG 256
|| |||| | ||||| | || |||||| |||| ||||||| ||||| | ||
Sbjct 311 AACATCATTGTTAGTT-CATCTCATAATCAT---GGAG---ACAACCCATGTCCTGATTG 363
Query 257 TGGAGATCAATCCAAACTCCACGGTGTAATCTCTTCTTGCCTTGATTGCTTT-CTCGCCG 315
|||||||| |||||| || |||||| || ||||| |||||||| || ||| || ||||
Sbjct 364 TGGAGATCGATCCAATCTTGGCGGTGTTATATCTTCCTGCCTTGAATG-TTTCCTTGCCG 422
Query 316 GAGGAAACCTCTATCTCTTCGAGTACGGTGTCTCTCCAGCTTTCTTTGTCGCAAAACAAC 375
|||| | |||||| |||| |||||| |||| || || ||| ||||| | || |||| |
Sbjct 423 GAGGTGATCTCTATGTCTTTGAGTACAGTGTTTCCCCTGCTATCTTTCTTGCCAAACCTC 482
Query 376 GAGG-AG-GTACTTGCACAACAGCACCTTCAGATCCTCCTGAAGAAGTTAT-TTTCCGTG 432
|||| | ||| ||||| | |||| ||||||||||||| |||||||| || | | || |
Sbjct 483 GAGGCGGCGTA--TGCACTATAGCATCTTCAGATCCTCCAGAAGAAGTCATCTAT-CGAG 539
Query 433 CGAAA-TTTCTCTTACTACGAAATGGGTTTGGTGCT-TACCATCTGTTTGAGAACAATTG 490
| ||| |||||||| | | |||||| ||||||| | ||| || | || ||||||| ||
Sbjct 540 C-AAATTTTCTCTTGC-A--AAATGGTTTTGGTG-TGTACAATGTCTTCAAGAACAACTG 594
Query 491 TGAAGATTTTGCCATCTATTGCAAAACTAGTTTGGTTGTCATGTCAAAGATCAA-GTTGG 549
||||||||||||||||||||||||||| ||||| | || | |||| | | | || ||
Sbjct 595 TGAAGATTTTGCCATCTATTGCAAAACGGGTTTGCTAGTG--G-CAAACACCGACGT-GG 650
Query 550 GAAGAAGTGGTCAAGC 565
|||| |||||||||||
Sbjct 651 GAAGGAGTGGTCAAGC 666
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37977015132
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5