BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg923063

Length=408
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G28030.1 | Symbols:  | Acyl-CoA N-acyltransferases (NAT) sup...   231    3e-60


> AT4G28030.1 | Symbols:  | Acyl-CoA N-acyltransferases (NAT) superfamily 
protein | chr4:13937676-13939144 REVERSE LENGTH=910
Length=910

 Score =  231 bits (125),  Expect = 3e-60
 Identities = 143/151 (95%), Gaps = 3/151 (2%)
 Strand=Plus/Plus

Query  111  GCATAACGGATATGTACGTGCATGTGACAGTAGCCAATGAAGCAGC-ACAGAGGCTATAC  169
            |||||||||||||||||||||||||||| |||| |||||||||||| | |||| ||||||
Sbjct  660  GCATAACGGATATGTACGTGCATGTGACGGTAGACAATGAAGCAGCGA-AGAGTCTATAC  718

Query  170  ATGAAAAGTGGGTTCGAGCAAGAGACCGCTGAGCCAGCGTGGCAAGCTCGATACCTCAAC  229
            |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| 
Sbjct  719  ATGAAAAGTGGGTTTGAGCAAGAGACCGCTGAGCCAGCGTGGCAAGCTCGATACCTCAAT  778

Query  230  AGGCCACAACGGCTCCTCCTCTGGCTCCGCC  260
            ||||||||||||||||||||||||||| |||
Sbjct  779  AGGCCACAACGGCTCCTCCTCTGGCTC-GCC  808



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19302815616


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5