BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg923064

Length=296
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G31051.1 | Symbols:  | unknown protein; Has 30201 Blast hits...   122    1e-27


> AT3G31051.1 | Symbols:  | unknown protein; Has 30201 Blast hits 
to 17322 proteins in 780 species: Archae - 12; Bacteria - 
1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses 
- 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr3:12667227-12667370 
FORWARD LENGTH=144
Length=144

 Score =  122 bits (66),  Expect = 1e-27
 Identities = 111/131 (85%), Gaps = 9/131 (7%)
 Strand=Plus/Plus

Query  171  CCTTTTGCACTTGTTCCTGGCACTATTCGCTCGTGCTATGGATCACATCGTGCCTCTTGC  230
            ||| |||||| |||||||| |||||||| ||||||||| |||||||||| ||||||||||
Sbjct  6    CCTCTTGCACATGTTCCTGACACTATTCACTCGTGCTACGGATCACATCATGCCTCTTGC  65

Query  231  ACTTCTTCCTGGCACTT-----T-AT--ACTCGTCGGCTCGTCAGCCATCCTGATCTATC  282
            |||| ||||| ||||||     |  |   |||||||||||||||||||||||||||||||
Sbjct  66   ACTTGTTCCTAGCACTTCACACTCGTCGGCTCGTCGGCTCGTCAGCCATCCTGATCTATC  125

Query  283  CGCAA-CCCGC  292
             |||| |||||
Sbjct  126  TGCAAACCCGC  136


 Score =  111 bits (60),  Expect = 3e-24
 Identities = 70/75 (93%), Gaps = 0/75 (0%)
 Strand=Plus/Plus

Query  67   CCTCTTGCACGTGTTCCTGGCACTAATCACTCGTGCTACGGATCACATCATGCCTATTGC  126
            |||||||||| |||||||| ||||| ||||||||||||||||||||||||||||| ||||
Sbjct  6    CCTCTTGCACATGTTCCTGACACTATTCACTCGTGCTACGGATCACATCATGCCTCTTGC  65

Query  127  ACTTGTTCCTGGCAC  141
            |||||||||| ||||
Sbjct  66   ACTTGTTCCTAGCAC  80



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 13672827728


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5