BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg923072

Length=413
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G01130.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   139    2e-32


> AT3G01130.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: endomembrane system; EXPRESSED IN: male gametophyte, 
pollen tube; EXPRESSED DURING: M germinated pollen 
stage; BEST Arabidopsis thaliana protein match is: unknown 
protein (TAIR:AT5G15320.1); Has 64 Blast hits to 64 proteins 
in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi 
- 0; Plants - 64; Viruses - 0; Other Eukaryotes - 0 (source: 
NCBI BLink). | chr3:44045-45590 REVERSE LENGTH=659
Length=659

 Score =  139 bits (75),  Expect = 2e-32
 Identities = 90/97 (93%), Gaps = 2/97 (2%)
 Strand=Plus/Plus

Query  211  CTTTACTCCGGCACCAGCACTCTTGCTCTGGTTGCTCGTGCTTCGGCTTTTGGGTTGGTT  270
            ||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| |
Sbjct  87   CTTTACTCCGGTACCAGCACTCTTGCTCTGGTTGCTCGTGCTTCGGCTTTCGGGTTGGGT  146

Query  271  CTTATCTATCG-CAACATCAAGCTCAAGGCTTTGAAG  306
            || ||||| || ||||||||||||||||||||| |||
Sbjct  147  CTCATCTA-CGGCAACATCAAGCTCAAGGCTTTAAAG  182



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19554154361


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5