BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg923074
Length=1079
Score E
Sequences producing significant alignments: (Bits) Value
AT4G09790.1 | Symbols: | pseudogene of the F-box family protei... 843 0.0
AT3G19560.1 | Symbols: | F-box family protein | chr3:6793311-6... 93.5 4e-18
AT3G23685.1 | Symbols: | F-box associated ubiquitination effec... 80.5 3e-14
AT3G22421.1 | Symbols: | F-box and associated interaction doma... 78.7 1e-13
AT3G23680.1 | Symbols: | F-box associated ubiquitination effec... 75.0 1e-12
AT5G41500.1 | Symbols: | F-box and associated interaction doma... 65.8 9e-10
> AT4G09790.1 | Symbols: | pseudogene of the F-box family protein
| chr4:6163414-6164655 REVERSE LENGTH=1242
Length=1242
Score = 843 bits (456), Expect = 0.0
Identities = 571/623 (92%), Gaps = 21/623 (3%)
Strand=Plus/Plus
Query 470 TTG-AGTCTAACT-CATGGAGGGTTCTTGATGCCACTCCTGACTGGGAGATAGATTCTTA 527
||| ||||||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 557 TTGAAGTCTAA-TGCATGGAGGGTTCTTGATGCCACTCCTGACTGGGAGATAGATTCTTA 615
Query 528 TCAACGTGGCGTGTCTTT-AAACGGAAATACTTAtttttttGCTAAAGAAAAAATAGTGG 586
|||||||||||||||||| ||| ||||||||||| |||||||||||||| ||||||||||
Sbjct 616 TCAACGTGGCGTGTCTTTGAAA-GGAAATACTTACTTTTTTGCTAAAGAGAAAATAGTGG 674
Query 587 TGGAAGGGGAAAGATG-GGTAGTGATTGATGAAGAGGTCAAAGATTTCTTGATCTGTTTT 645
||||||||| | |||| ||||||| | |||||| |||||||||| ||||||||||||
Sbjct 675 TGGAAGGGG-ATGATGTTGTAGTGA-T--TGAAGATTTCAAAGATTTTTTGATCTGTTTT 730
Query 646 GATTTTACAAGTGAGAG-----ATTTGAACCGCGTCTTCCTCTGCCGTTTTACTCTTACG 700
||||||||||||||||| ||||| ||| ||||| ||||| |||||| ||||||||
Sbjct 731 GATTTTACAAGTGAGAGATTTAATTTGGACCACGTCTGCCTCTACCGTTTCACTCTTACA 790
Query 701 ATGGAGAGACCGTGACTCTTTCTAGTGTTAGAGAAGACCAGCTTGCAGTGTTATATCAGC 760
||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 791 ATGGAGAGACCGTGACTCTTTCTAGTGTTAGAGAAGAGCAGCTAGCAGTGTTATATCAGC 850
Query 761 GGGATACTTGTTTGATGGAGATATGGGTTACGAATAAGATTGAGCCGGATGTGGTGTCAT 820
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 851 AGGATACTTGTTTGATGGAGATATGGGTTACGAATAAGATTGAACCGGATGTGGTGTCAT 910
Query 821 GGAGCAAGGTGTTCTTAGCAGTGGATATGAAACCACTCACTGGTTCTCATCAT-CCGTTT 879
||||||||||||| ||||||||||||||| ||||||||||||||||| | || ||||||
Sbjct 911 GGAGCAAGGTGTTTTTAGCAGTGGATATGGAACCACTCACTGGTTCT-TTTATCCCGTTT 969
Query 880 GCTTTTTACGCTGGGAGTTTCTTCATTGACGAGGAGaaaaaaaTCGCTGTGGTATTCGAT 939
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 970 GCTTTTTTCGCTGGGAGTTTCTTCATTGACGAGGAGAAAAAAATCGCTGTGGTATTCGAT 1029
Query 940 AAAGACAAAGAGGAGATCAACGACAGAGCTTACCTGATTGGAGAGAATGGATACTACAAA 999
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1030 AAAGACCAAGAGGAGATCAACGACAGAGCTTACCTGATTGGAGAGAATGGATACTACAAA 1089
Query 1000 GAAGTGGATCTTGGATACCTGAATGGATACTACCAA-A-CAAGTAGATCTTATGAGCCCT 1057
|||||||||||||||||| ||||||||||||||||| | |||||||||| || | | |||
Sbjct 1090 GAAGTGGATCTTGGATACATGAATGGATACTACCAACAACAAGTAGATCCTAGGGGACCT 1149
Query 1058 AATACTA-TTTACCCTCTCGTGT 1079
|| | | ||| |||||||||||
Sbjct 1150 GATCC-AGTTTTCCCTCTCGTGT 1171
Score = 484 bits (262), Expect = 6e-136
Identities = 329/359 (92%), Gaps = 13/359 (4%)
Strand=Plus/Plus
Query 100 TGGAACACTATATCCAAAGATCCGAGCTTTGCGAAGACGCACTTTGGTAAAGCGGCGAGA 159
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 100 TGGAACACTATATCCAAAGATCCGAGCTTTGCGAAGACGCACTTTGGTAAAGCGGCGAGA 159
Query 160 CAGTTAATTATGTTGTCTGAATTTAGGGTTTGGTTGATGAGTGTAAAATTCCAAGGAGAC 219
||||| |||||| ||||| ||| ||||||| ||||||||| |||||| |||| ||||||
Sbjct 160 CAGTTTATTATGATGTCTCAATCGAGGGTTTCGTTGATGAGCGTAAAACTCCATGGAGAC 219
Query 220 TGTGACGAGGACGAGTTGGCCGATCCATATAT----GAAGGGTATAGGTAAGCTTACAAG 275
|| |||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 220 GGTAACGAGGACGAGTTGGCCGATCCATATATATATGAAGGGTATAGGTAAGCTTACAAG 279
Query 276 CCTAAACAATTTAGATCAAGTGGAGATATCAAAAGTTTTTCACTGCAACGGCTTACTCTT 335
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 280 CCTAAACAATTTAGATCAAGTGGAGATATCAAAAGTGTTTCACTGCAACGGCTTACTCTT 339
Query 336 ATGCTTGACCAAGGACAAGACTAGGCTC----G--T-G-G-TATGGAACCCGTATTTGGG 386
||| ||||||||||||||||||||||| | | | | |||||||||||||||||||
Sbjct 340 GTGCCTGACCAAGGACAAGACTAGGCTCACTAGCCTCGTGGTATGGAACCCGTATTTGGG 399
Query 387 ACAAACCAGGTCGATCGAACCCAGAAACGCTTTCCACAGATTAGACGTGTATGCTCTAG 445
||||||||||| |||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 400 ACAAACCAGGTGGATCAAACCCAGACACGCTTTCCACAGATTAGACGTGTATGCTCTAG 458
> AT3G19560.1 | Symbols: | F-box family protein | chr3:6793311-6794802
FORWARD LENGTH=1267
Length=1267
Score = 93.5 bits (50), Expect = 4e-18
Identities = 103/128 (80%), Gaps = 6/128 (5%)
Strand=Plus/Plus
Query 286 TTAGATCAAGTGGAGATATCAAAAGTTTTTCACTGCAACGGCTTACTCTTATGCTTGACC 345
||| |||||| |||||| ||||| ||||| || | || ||| | |||||| | |||
Sbjct 462 TTA-ATCAAGACCAGATATTTAAAGTGTTTCATTGTGATGGTTTATTGTTATGCATCACC 520
Query 346 -A--AGGACAAGACTAGGCTCGTGGTATGGAACCCGTATTTGGGACAAACCAGGT-CGAT 401
| |||| || ||||||||||||||||||||||||||||||| ||||||||||| | ||
Sbjct 521 AATGAGGATAATACTAGGCTCGTGGTATGGAACCCGTATTTGGCACAAACCAGGTGC-AT 579
Query 402 CGAACCCA 409
| ||||||
Sbjct 580 CCAACCCA 587
> AT3G23685.1 | Symbols: | F-box associated ubiquitination effector
family protein | chr3:8527239-8528317 FORWARD LENGTH=993
Length=993
Score = 80.5 bits (43), Expect = 3e-14
Identities = 53/58 (91%), Gaps = 0/58 (0%)
Strand=Plus/Plus
Query 633 CTTGATCTGTTTTGATTTTACAAGTGAGAGATTTGAACCGCGTCTTCCTCTGCCGTTT 690
||| ||||||||||||||||||||||||||||||| |||| ||| ||||||||||||
Sbjct 555 CTTAATCTGTTTTGATTTTACAAGTGAGAGATTTGGTCCGCTTCTGCCTCTGCCGTTT 612
> AT3G22421.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr3:7949116-7950396 REVERSE LENGTH=1281
Length=1281
Score = 78.7 bits (42), Expect = 1e-13
Identities = 94/117 (80%), Gaps = 11/117 (9%)
Strand=Plus/Plus
Query 637 ATCTGTTTTGATTTTACAAGTGAGAGATTTGAACCGCGTCTTCCTCTGCCGTTT-T-AC- 693
||||||||||||||||||||||||||||||| |||| | | ||| |||||||| | |
Sbjct 718 ATCTGTTTTGATTTTACAAGTGAGAGATTTGGTCCGCTTATGCCTTTGCCGTTTGTTAGA 777
Query 694 TCTTACGAT--GGAGAGACC--GTGACTCTTTCTAGTGTTAGAGAAGACCAGCTTGC 746
| | ||| | ||| || || |||||||| ||| ||||||||||||| |||||||
Sbjct 778 TAT-ACG-TCCGGA-AG-CCTTGTGACTCTATCTTGTGTTAGAGAAGAGAAGCTTGC 830
> AT3G23680.1 | Symbols: | F-box associated ubiquitination effector
family protein | chr3:8526366-8527173 REVERSE LENGTH=708
Length=708
Score = 75.0 bits (40), Expect = 1e-12
Identities = 52/58 (90%), Gaps = 0/58 (0%)
Strand=Plus/Plus
Query 633 CTTGATCTGTTTTGATTTTACAAGTGAGAGATTTGAACCGCGTCTTCCTCTGCCGTTT 690
||| ||||||||||||||||||||||||||||||| || | ||| ||||||||||||
Sbjct 171 CTTAATCTGTTTTGATTTTACAAGTGAGAGATTTGGTCCTCTTCTGCCTCTGCCGTTT 228
> AT5G41500.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr5:16604002-16605213 FORWARD LENGTH=1212
Length=1212
Score = 65.8 bits (35), Expect = 9e-10
Identities = 43/47 (91%), Gaps = 0/47 (0%)
Strand=Plus/Plus
Query 637 ATCTGTTTTGATTTTACAAGTGAGAGATTTGAACCGCGTCTTCCTCT 683
||||||||||||||||||||||||||||||| |||| ||| |||||
Sbjct 691 ATCTGTTTTGATTTTACAAGTGAGAGATTTGGTCCGCTTCTACCTCT 737
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52861173885
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5