BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg923075

Length=727
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G47640.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...  1157    0.0  
  AT1G47625.1 | Symbols:  | pseudogene of seven transmembrane dom...   183    2e-45


> AT1G47640.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: mitochondrion; EXPRESSED IN: 23 plant structures; 
EXPRESSED DURING: 13 growth stages; CONTAINS InterPro 
DOMAIN/s: Protein of unknown function DUF2053, membrane (InterPro:IPR019164); 
Has 204 Blast hits to 204 proteins in 84 
species: Archae - 0; Bacteria - 0; Metazoa - 127; Fungi - 0; 
Plants - 50; Viruses - 0; Other Eukaryotes - 27 (source: NCBI 
BLink). | chr1:17518189-17520128 REVERSE LENGTH=1037
Length=1037

 Score = 1157 bits (626),  Expect = 0.0
 Identities = 693/725 (96%), Gaps = 6/725 (1%)
 Strand=Plus/Plus

Query  3    AGAGAGCGACGGTGGACGATGACGCTTTTTCACTTCTTCAACTGTGCGATTCTCACATTC  62
            |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  113  AGAGTGCGACGGTGGACGATGACGCTTTTTCACTTCTTCAACTGTGCGATTCTCACATTC  172

Query  63   GGTCCTCACGCCGTCTACTACTCCGCCACTCCCTTATCTGAATATGATACACTTGGAACC  122
            ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  173  GGTCCTCACGCGGTCTACTACTCCGCCACTCCCTTATCTGAATATGATACACTTGGAACC  232

Query  123  TCCGTGAAAGCTGCTGTTGTTTACCTTGCTACTGCATTGGTTAAGCTTGTTTGTTTAGCG  182
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct  233  TCCGTGAAAGCTGCTGTTGTTTACCTTGCTACTGCATTGGTTAAGCTTGTTTGTTTGGCG  292

Query  183  ACTTTTCTGCAAGTTTCTGAGACTGAAGTATTTGACCCATACCAGGAAGCATTGAAAGCA  242
            |||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| 
Sbjct  293  ACTTTTCTGCAAGTGTCTGAGACTGAAGTGTTTGACCCATACCAGGAAGCATTGAAAGCG  352

Query  243  ATGATTGGCTTCATAGACGTTGCTGGTCTATATTATGCTCTGGCCCAGCTGACACACAGG  302
            |||||||| |||||||| || |||||||| ||||||||||||||||||||||| ||||||
Sbjct  353  ATGATTGGATTCATAGATGTCGCTGGTCTGTATTATGCTCTGGCCCAGCTGACTCACAGG  412

Query  303  AACATCTCCCAAAACCATAAGTTTCAAGCTGTTGGCCTTGGATGGGCATTCGCAGATTCT  362
            |||||||||||||||||||||||||| |||||||| || || ||||||||||| ||||||
Sbjct  413  AACATCTCCCAAAACCATAAGTTTCAGGCTGTTGGTCTCGGGTGGGCATTCGCGGATTCT  472

Query  363  GTTTTGCACAGGTTGGCACCTCTCTGGGTCGGTGCTCGAGGACTGGAGTTCACTTGGGAT  422
            ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct  473  GTTTTGCACAGGTTGGCACCTCTCTGGGTTGGTGCTCGAGGACTGGAGTTCACTTGGGAT  532

Query  423  TATGTTTTGCAAGGGCTTGAAGCCAATGCAAATCTGGTGTTCACGATATCTCTAGCTGCA  482
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  533  TATGTTTTGCAAGGGCTTGAAGCCAATGCAAATCTGGTGTTCACGATATCTCTAGCTGCA  592

Query  483  CTAGGTTCTTTGATGTGGCTACGCAAGAACAAGCCGAAGAGTCTGATCCCCATCATATAC  542
            |||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  593  CTAGGTTCATTAATGTGGCTACGCAAGAACAAGCCGAAGAGTCTGATCCCCATCATATAC  652

Query  543  ACTTGTGCAGTCATCATCGCAACAATGCCGTCTATCACAAGCTATCTAAAGAGAGTCA-T  601
            || |||||||||||||| || |||||||| || ||||||||||||||||||||||||| |
Sbjct  653  ACATGTGCAGTCATCATTGCGACAATGCCTTCGATCACAAGCTATCTAAAGAGAGTCAAT  712

Query  602  GGGATGGCATTTCCCGAAAATTGTTGGGTTTGAGCTTGTGACTTCTCTGGTAATGGCTTT  661
            || ||||||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct  713  GG-ATGGCATTTCCCGAAAATTGTTGGGTTTGAGCTGGCGACTTCTCTGGTAATGGCTTT  771

Query  662  TATCAGTTGTCAACTCTTCATCCTCTGTCAGAGACCGTCTTTGTGA-T--T-CCACTTCC  717
            |||||||||||||||||||||||||||||||||||||||||||||| |  | ||||||||
Sbjct  772  TATCAGTTGTCAACTCTTCATCCTCTGTCAGAGACCGTCTTTGTGAGTGATTCCACTTCC  831

Query  718  CAGCA  722
            |||||
Sbjct  832  CAGCA  836


> AT1G47625.1 | Symbols:  | pseudogene of seven transmembrane domain 
protein | chr1:17510810-17511489 REVERSE LENGTH=471
Length=471

 Score =  183 bits (99),  Expect = 2e-45
 Identities = 109/114 (96%), Gaps = 0/114 (0%)
 Strand=Plus/Plus

Query  345  TGGGCATTCGCAGATTCTGTTTTGCACAGGTTGGCACCTCTCTGGGTCGGTGCTCGAGGA  404
            ||||||||||| ||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct  1    TGGGCATTCGCGGATTCTGTTTTGCACAGATTGGCACCTCTCTGGGTTGGTGCTCGAGGA  60

Query  405  CTGGAGTTCACTTGGGATTATGTTTTGCAAGGGCTTGAAGCCAATGCAAATCTG  458
            |||||||||||||||||||||||||||||||| |||||||||||| ||||||||
Sbjct  61   CTGGAGTTCACTTGGGATTATGTTTTGCAAGGCCTTGAAGCCAATCCAAATCTG  114


 Score =  178 bits (96),  Expect = 7e-44
 Identities = 111/118 (94%), Gaps = 2/118 (2%)
 Strand=Plus/Plus

Query  534  ATCATATACACTTGTGCAGTCATCATCGCAACAATGCCGTCTATCACAAGCTATCTAAAG  593
            ||||||||||| |||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct  280  ATCATATACACATGTGCAGTCATCATCGCAACAATGCCTTCGATCACAAGCTATCTAAAG  339

Query  594  AGAGTC-ATGGGATGGCATTTCCCGAAAATTGTTGGGTTTGAGCTTGTGACTTCTCTG  650
            |||||| || ||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct  340  AGAGTCAAT-GGATGGCATTTCCCGAAAATTGTTGGGTTTGAGCTGGCGACTTCTCTG  396



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 35264371194


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5