BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg923084
Length=1180
Score E
Sequences producing significant alignments: (Bits) Value
AT1G47765.1 | Symbols: | F-box and associated interaction doma... 346 3e-94
> AT1G47765.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr1:17574906-17576092 REVERSE LENGTH=1158
Length=1158
Score = 346 bits (187), Expect = 3e-94
Identities = 557/727 (77%), Gaps = 59/727 (8%)
Strand=Plus/Plus
Query 408 GGCTTGATCTGCTTTCAAG-TATCAGGAACGCCAATTGTTTCGAACCCTAGCAAAAGAGA 466
||||||||||||||| ||| |||| || ||| || |||| |||||||||||| ||| |
Sbjct 364 GGCTTGATCTGCTTT-AAGACATCAAAAATGCCGATAGTTTGGAACCCTAGCAAGAGACA 422
Query 467 GTT-ATTACCCTTACCCAAACCCCCA--AAG--AG-CTTGTATGCTAACTTTT-TAGGAT 519
||| | || | ||||||| |||| | ||| | | ||| || |||| ||||||
Sbjct 423 GTTGA-TAACTTTACCCATACCCAGATTAAGCTGGAATAATATAATAGTTTTTCTAGGAT 481
Query 520 ACGATCCAGTTGAAGGTAAACACAAAGTAATGTGCATGCCTCATTC-AATAAGTTCTGAT 578
||||||||||||||||||||||||||||||||||| ||||| || || ||||||||||
Sbjct 482 ACGATCCAGTTGAAGGTAAACACAAAGTAATGTGCTTGCCTT-TTAGAAGAAGTTCTGAT 540
Query 579 GTGCGTTGGGTGTTTACATTGGGGTC-GACTCAAGA-TTC--ATGGAGAACGGTCAACAC 634
|| || ||||| ||||| || | | ||||||| ||| ||||| |||||| || ||
Sbjct 541 GTATGTCAAGTGTTAACATTAGGACCAG-CTCAAGAATTCTCATGGATAACGGTAAAAAC 599
Query 635 CAACCATAGGCATCCTTCTGACTA-CAATACTTTTGGGCGATGCATCAAGGGGGTCATAT 693
|||||| |||| ||||||||| || | || ||| ||||||||||||||||| |||
Sbjct 600 GTACCATAAGCATTGTTCTGACTATCAG-AGTTCTGGTCGATGCATCAAGGGGGTTGTAT 658
Query 694 ATTATGTAGAGGATA-TTTATAATA-AGGGTGTTTTGGTTATAAT-TACATTTGATGTCA 750
||||| ||| | | ||||| ||| | || || |||| |||| | ||||||||||
Sbjct 659 ATTATATAGCTCA-AGTTTATCATACACA-TGCTTGGGTTTTAATGTGT-TTTGATGTCA 715
Query 751 GATTTGAAAAATTTGGTATGATAGATTTACCAT-CGGATATATTTTATAGGGACATGCTG 809
||| ||||||||| | |||||| | |||| || ||||||| || ||||||| || ||
Sbjct 716 GATCTGAAAAATTCGACATGATAAAATTAC-ATGCGGATAT-TT--ATAGGGAAATTCTC 771
Query 810 ATAAATTATAAGGGGAG-ATTAGCTTTTGTTGATAAAAA-TAAAACGA-GGAAGAG--CA 864
|||| |||| ||||||| || ||||| |||||| |||| || |||| ||| || ||
Sbjct 772 ATAACTTATGAGGGGAGGAT-AGCTTGTGTTGA-AAAACGTACCACGAAGGATGATTACA 829
Query 865 ---CATTGTGGATTTTGGAGGATGCAAAGAAACACAAATGGTCATCAAGTAAAGATTTTC 921
||||||| ||||||||||| ||||| ||| |||| ||||| | |||||||| |||
Sbjct 830 TAGCATTGTGCATTTTGGAGGACGCAAAAAAAGACAAGTGGTCG--A-GTAAAGATATTC 886
Query 922 TTGAACCTTTTAGTTACTATGAT-AAGAGTTTGAA-AAGCGATTTC-AACCTAAAAGGTT 978
||| ||||||| || ||| |||| || || || || || | |||| ||| |||||||||
Sbjct 887 TTGCACCTTTTGGTCACTTTGATGAA-AGATT-AAGAACCTTTTTCCAAC-TAAAAGGTT 943
Query 979 TCACTCATGCTGGTGAGCTTATTTAT-GC-TCCATCCACATTTC-ACAA-ATC-ATTTTA 1033
|||||||| |||||| |||||| | | || ||||| |||| | || || ||| |
Sbjct 944 GCACTCATGATGGTGAATTTATTT-TCGTATCT-TCCACGTTTCGA-AAGATGGATT--A 998
Query 1034 TATTTTATTTTGTGATTCGGTGAGAGAAAGCTTTAGAAGATTCGAATTTAAAGGAATCAC 1093
||||||||||| |||| |||||| | ||| |||||||||||||||| |||||| ||| |
Sbjct 999 TATTTTATTTTTTGATCCGGTGAAAAAAACCTTTAGAAGATTCGAACTTAAAGAAATTGC 1058
Query 1094 AGATGAC 1100
||| |||
Sbjct 1059 AGACGAC 1065
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57931428930
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5