BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg923086 Length=568 Score E Sequences producing significant alignments: (Bits) Value AT1G47760.1 | Symbols: AGL102 | AGAMOUS-like 102 | chr1:1757245... 558 2e-158 > AT1G47760.1 | Symbols: AGL102 | AGAMOUS-like 102 | chr1:17572451-17573159 FORWARD LENGTH=555 Length=555 Score = 558 bits (302), Expect = 2e-158 Identities = 455/528 (86%), Gaps = 13/528 (2%) Strand=Plus/Plus Query 21 ATGGGTCCTCGAAAAATAGAGATAAAACGTATTGAAAATAGCATCGAAAGGAATGCGACG 80 ||||||| | ||||||||||||||||| ||||||| |||||||||||||||| |||||| Sbjct 1 ATGGGTCGTAGAAAAATAGAGATAAAATTTATTGAAGATAGCATCGAAAGGAAAGCGACG 60 Query 81 -TTTCTAAGACTCCGAGATGACATTTTTAAGAAGGCCGATGCACTCGCAAAGCTGTATCA 139 |||| ||||| |||| ||| ||||||||||||||| |||| |||||| ||| ||| | | Sbjct 61 TTTTC-AAGACGCCGAAATGGCATTTTTAAGAAGGCTGATGAACTCGCGAAGTTGTGTAA 119 Query 140 TGTGGAAG-TTGCTGTCTTGGTGATCTCCCCCACAAATGTACCGTATACATACGGTAATC 198 ||| | || ||||||||||||| ||||||||||| ||| |||| || ||||||||| ||| Sbjct 120 TGTAG-AGATTGCTGTCTTGGTCATCTCCCCCACTAATATACCATACACATACGGTTATC 178 Query 199 CATGCTTCAACGATGTGGTTGAGCATATTCAAAATCCTAGTGCTTCGTCCAAAATC-GTT 257 |||||||||||||||||||||||| |||||||||||||||||||||||||||| || | Sbjct 179 CATGCTTCAACGATGTGGTTGAGCGTATTCAAAATCCTAGTGCTTCGTCCAAACTCAG-G 237 Query 258 AGTCTCATGAAAGAATTGGAATGTATCAAAGAGCTTGAGGAGG-TTTGGACGAAGAGGCA 316 ||||||||||||||||||||| ||||||||| || |||||| ||| || ||||| || Sbjct 238 AGTCTCATGAAAGAATTGGAACAAATCAAAGAGTTTCAGGAGGATTT-GAGGAAGAAACA 296 Query 317 ACAAAGAAACCATGAAAAGTCCAATATGAAGGGGATTGTTGATCTGAAAGTGGAGGACTT 376 |||||||||| |||||||||||||||||| | || ||| ||||||||| |||||||||| Sbjct 297 GCAAAGAAACCTTGAAAAGTCCAATATGAAAGAGAATGTAGATCTGAAATTGGAGGACTT 356 Query 377 AGTTGCTTTCAAGGGGAAACTCGAAGCTTTTCAAGTAGGTTTAAAGA-GAAAAATTGTAG 435 |||||||||||||| ||||||||| || | ||||| ||||||||||| |||| | ||||| Sbjct 357 AGTTGCTTTCAAGGCGAAACTCGAGGCCTATCAAGCAGGTTTAAAGAGGAAACA-TGTAG 415 Query 436 AGATGGAGGATTTGTCTTCTCCATCGATGGTCTCAAAGAAAACAAAGAAGA-GAAGACAA 494 |||||||||||||||||||||||||||| |||||||||| |||||||| | || || | Sbjct 416 AGATGGAGGATTTGTCTTCTCCATCGATACTCTCAAAGAATACAAAGAATAAGATGATGA 475 Query 495 GGACCGAGTTTTATTCCGGACAGAGCAG-GGAAATGTATGTGCTTCGG 541 ||||||||| || || |||||||||| |||| |||||| | ||||| Sbjct 476 GGACCGAGTATTCGTCTGGACAGAGCAAAGGAA-TGTATGAGTTTCGG 522 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 27277141821 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5