BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg923086

Length=568
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G47760.1 | Symbols: AGL102 | AGAMOUS-like 102 | chr1:1757245...   558    2e-158


> AT1G47760.1 | Symbols: AGL102 | AGAMOUS-like 102 | chr1:17572451-17573159 
FORWARD LENGTH=555
Length=555

 Score =  558 bits (302),  Expect = 2e-158
 Identities = 455/528 (86%), Gaps = 13/528 (2%)
 Strand=Plus/Plus

Query  21   ATGGGTCCTCGAAAAATAGAGATAAAACGTATTGAAAATAGCATCGAAAGGAATGCGACG  80
            ||||||| | |||||||||||||||||  ||||||| |||||||||||||||| ||||||
Sbjct  1    ATGGGTCGTAGAAAAATAGAGATAAAATTTATTGAAGATAGCATCGAAAGGAAAGCGACG  60

Query  81   -TTTCTAAGACTCCGAGATGACATTTTTAAGAAGGCCGATGCACTCGCAAAGCTGTATCA  139
             |||| ||||| |||| ||| ||||||||||||||| |||| |||||| ||| ||| | |
Sbjct  61   TTTTC-AAGACGCCGAAATGGCATTTTTAAGAAGGCTGATGAACTCGCGAAGTTGTGTAA  119

Query  140  TGTGGAAG-TTGCTGTCTTGGTGATCTCCCCCACAAATGTACCGTATACATACGGTAATC  198
            ||| | || ||||||||||||| ||||||||||| ||| |||| || ||||||||| |||
Sbjct  120  TGTAG-AGATTGCTGTCTTGGTCATCTCCCCCACTAATATACCATACACATACGGTTATC  178

Query  199  CATGCTTCAACGATGTGGTTGAGCATATTCAAAATCCTAGTGCTTCGTCCAAAATC-GTT  257
            |||||||||||||||||||||||| |||||||||||||||||||||||||||| || |  
Sbjct  179  CATGCTTCAACGATGTGGTTGAGCGTATTCAAAATCCTAGTGCTTCGTCCAAACTCAG-G  237

Query  258  AGTCTCATGAAAGAATTGGAATGTATCAAAGAGCTTGAGGAGG-TTTGGACGAAGAGGCA  316
            |||||||||||||||||||||   ||||||||| || |||||| ||| || |||||  ||
Sbjct  238  AGTCTCATGAAAGAATTGGAACAAATCAAAGAGTTTCAGGAGGATTT-GAGGAAGAAACA  296

Query  317  ACAAAGAAACCATGAAAAGTCCAATATGAAGGGGATTGTTGATCTGAAAGTGGAGGACTT  376
             |||||||||| |||||||||||||||||| | || ||| ||||||||| ||||||||||
Sbjct  297  GCAAAGAAACCTTGAAAAGTCCAATATGAAAGAGAATGTAGATCTGAAATTGGAGGACTT  356

Query  377  AGTTGCTTTCAAGGGGAAACTCGAAGCTTTTCAAGTAGGTTTAAAGA-GAAAAATTGTAG  435
            |||||||||||||| ||||||||| || | ||||| ||||||||||| |||| | |||||
Sbjct  357  AGTTGCTTTCAAGGCGAAACTCGAGGCCTATCAAGCAGGTTTAAAGAGGAAACA-TGTAG  415

Query  436  AGATGGAGGATTTGTCTTCTCCATCGATGGTCTCAAAGAAAACAAAGAAGA-GAAGACAA  494
            ||||||||||||||||||||||||||||  |||||||||| |||||||| | || ||  |
Sbjct  416  AGATGGAGGATTTGTCTTCTCCATCGATACTCTCAAAGAATACAAAGAATAAGATGATGA  475

Query  495  GGACCGAGTTTTATTCCGGACAGAGCAG-GGAAATGTATGTGCTTCGG  541
            ||||||||| ||  || ||||||||||  |||| |||||| | |||||
Sbjct  476  GGACCGAGTATTCGTCTGGACAGAGCAAAGGAA-TGTATGAGTTTCGG  522



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 27277141821


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5