BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg923098

Length=472
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G47830.1 | Symbols:  | SNARE-like superfamily protein | chr1...   774    0.0  


> AT1G47830.1 | Symbols:  | SNARE-like superfamily protein | chr1:17613098-17614926 
REVERSE LENGTH=819
Length=819

 Score =  774 bits (419),  Expect = 0.0
 Identities = 454/471 (96%), Gaps = 2/471 (0%)
 Strand=Plus/Plus

Query  1    TTCTCCATTAGA-TTTCCAGAG-AAATGATCCGTTTCATATTATTGCAGAACAGGCAAGG  58
            |||||||||||| ||| ||||| |||||||||| |||||||||||||||||||| |||||
Sbjct  118  TTCTCCATTAGATTTTGCAGAGAAAATGATCCGATTCATATTATTGCAGAACAGACAAGG  177

Query  59   TAAGACTCGTCTTGCCAAATACTATGTTCCTCTCGAAGAATCAGAGAAACATAAAGTTGA  118
            |||||||||||| |||||||||||||| |||||||||||||| |||||||| ||||| ||
Sbjct  178  TAAGACTCGTCTAGCCAAATACTATGTCCCTCTCGAAGAATCCGAGAAACACAAAGTCGA  237

Query  119  ATACGAGGTTCATAGGTTAGTGGTGAATCGCGACGCGAAATTCACCAACTTCGTTGAGTT  178
            ||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct  238  ATACGAGGTTCATAGATTAGTGGTGAATCGCGACGCCAAATTCACCAACTTCGTTGAGTT  297

Query  179  TAGAACGCACAAGGTGATATACAGGCGTTATGCTGGATTGTTTTTCTCTGTGTGCGTGGA  238
            |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  298  TAGAACACACAAGGTGATATACAGGCGTTATGCTGGATTGTTTTTCTCTGTGTGCGTGGA  357

Query  239  TATAACCGACAATGAGTTGGCTTACCTGGAGAGTATCCATTTGTTTGTGGAGATATTGGA  298
            ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct  358  TATAACCGACAATGAGTTGGCTTACTTGGAGAGTATCCATTTGTTTGTGGAGATATTGGA  417

Query  299  CCATTTCTTCAGCAATGTTTGTGAGCTAGATTTGGTGTTTAATTTCCACAAGGTTTACTT  358
            |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct  418  CCATTTCTTCAGCAATGTTTGTGAGCTAGATTTGGTGTTTAATTTCCACAAGGTGTACTT  477

Query  359  GATACTCGATGAATTCATTCTTGCTGGGGAGCTCCAAGAAACAAGCAAAAGGGCAATCAT  418
            |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  478  GATACTCGATGAGTTCATTCTTGCTGGGGAGCTCCAAGAAACAAGCAAAAGGGCAATCAT  537

Query  419  CGAAAGGATGTCAGAACTCGAGAAGCTACAGTGATGACGGTTAGGAATCAC  469
            ||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct  538  CGAAAGGATGTCAGAACTCGAGAAGCTACAGTGATGACGGTTAAGAATCAC  588



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22454663709


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5