BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg923104

Length=364
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G47890.1 | Symbols: AtRLP7, RLP7 | receptor like protein 7 |...   261    3e-69
  AT1G47880.1 | Symbols:  | pseudogene, similar to NL0E, similar ...   230    9e-60


> AT1G47890.1 | Symbols: AtRLP7, RLP7 | receptor like protein 7 
| chr1:17643976-17647035 FORWARD LENGTH=3060
Length=3060

 Score =  261 bits (141),  Expect = 3e-69
 Identities = 251/304 (83%), Gaps = 8/304 (3%)
 Strand=Plus/Plus

Query  30   TCCATTGATGAATCTTTTCTTCCTCTACTTGCTCGAAACTTGAGAAACCTTAAAGAACTG  89
            ||||||||| |||||||||||||||||||||||||||||||||| ||||||| |||||| 
Sbjct  637  TCCATTGATAAATCTTTTCTTCCTCTACTTGCTCGAAACTTGAGGAACCTTAGAGAACTA  696

Query  90   GATATGAGCTCCGTAAACATTTCTTCAGAAATCCCCCACGACTTTTCAAACATGTGTTCT  149
            |||||||||| |||||| |||||||||||||||||| | || |||||||||||  | |||
Sbjct  697  GATATGAGCTACGTAAAAATTTCTTCAGAAATCCCCGAGGAGTTTTCAAACATACGGTCT  756

Query  150  CTAAGTT-TGCTAAATCTTGCCAACTGCAACCTGTTTGGAGAATTTCCAAACAGTGTTTT  208
            ||||| | | |||||||||     ||||||||| |||||||||||||||| |||| || |
Sbjct  757  CTAAGATCT-CTAAATCTTAATGGCTGCAACCTATTTGGAGAATTTCCAAGCAGTATTCT  815

Query  209  TCTAATACCCAGTTTACAGTCCATT-ATGTTGGATGGAA-ATTCA-AATCTGAGAGGCAA  265
            ||| || ||||  ||||| || ||| |  || |  |||| | ||  ||||||||||||||
Sbjct  816  TCTGATTCCCAACTTACAATCTATTGAC-TTAG--GGAACAATCCTAATCTGAGAGGCAA  872

Query  266  TCTTCCCCTATTCCGTGAAAATAACTCTATGCTAGAGTTGAGCATTCACAACACATCTTT  325
            ||||||| | || | |||||| |||||| ||||| |||||| ||||    ||||||| ||
Sbjct  873  TCTTCCCGTTTTTCATGAAAACAACTCTTTGCTAAAGTTGACCATTTTGTACACATCCTT  932

Query  326  TTCA  329
            ||||
Sbjct  933  TTCA  936


> AT1G47880.1 | Symbols:  | pseudogene, similar to NL0E, similar 
to disease resistance protein GB:BAB02103 GI:9294201 from 
(Arabidopsis thaliana); blastp match of 52% identity and 3.9e-11 
P-value to GP|4235643|gb|AAD13303.1||AF119040 NL0E {Lycopersicon 
esculentum} | chr1:17640046-17641148 FORWARD LENGTH=1103
Length=1103

 Score =  230 bits (124),  Expect = 9e-60
 Identities = 213/255 (84%), Gaps = 10/255 (4%)
 Strand=Plus/Plus

Query  14    TTTTT-CGATGCCGCTGTCCATTGATGAA-TCTTTTCTTCCTCTACTTGCTCGAAACTTG  71
             ||||| | ||||| || || ||| || || |||||||||| |||||||||||||||||||
Sbjct  817   TTTTTAC-ATGCCTCTATCAATTTAT-AATTCTTTTCTTCATCTACTTGCTCGAAACTTG  874

Query  72    AGAAACCTTAAAGAACTGGATATGAGCTCCGTAAACATTTCTTCAGAAATCCCCCACGAC  131
             |||||||||| |||| |||||||||| | ||||||||||| |||| ||||| |||| || 
Sbjct  875   AGAAACCTTAGAGAATTGGATATGAGTTTCGTAAACATTTATTCATAAATCTCCCATGAA  934

Query  132   TTTTCAAACATGT-GTTCTCTAAGTTTGCTAAATCTTGCCA-ACTGCAACCTGTTTGGAG  189
             ||||||||||||| || ||||||| | |||||||||||  | |||| ||||| |||||||
Sbjct  935   TTTTCAAACATGTAGT-CTCTAAGATGGCTAAATCTTGA-AGACTGTAACCTATTTGGAG  992

Query  190   AATTTCCAAACAGTGTTTTTCTAATACCCAGTTTACAGTCCATTATG-TTGGATGGAAAT  248
             ||||||||| |||||||  ||| |||||||| | | ||||||||| | ||| | | ||||
Sbjct  993   AATTTCCAAGCAGTGTTCATCTGATACCCAGCTGAGAGTCCATTA-GATTGTACGAAAAT  1051

Query  249   TCAAATCTGAGAGGC  263
              |||| |||| ||||
Sbjct  1052  CCAAACCTGATAGGC  1066



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 17091034660


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5