BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg923105
Length=734
Score E
Sequences producing significant alignments: (Bits) Value
AT1G47900.1 | Symbols: | Plant protein of unknown function (DU... 531 5e-150
> AT1G47900.1 | Symbols: | Plant protein of unknown function (DUF869)
| chr1:17647144-17651425 REVERSE LENGTH=3391
Length=3391
Score = 531 bits (287), Expect = 5e-150
Identities = 381/425 (90%), Gaps = 11/425 (3%)
Strand=Plus/Plus
Query 298 CTGCAGAGCATTCACCAAGATTTGAAAAATTCTGTTTCTCGGATTCATGACTTTGTTTTG 357
|||||||||||||||||||||||||||||| |||| |||||||||||||| |||||||||
Sbjct 1978 CTGCAGAGCATTCACCAAGATTTGAAAAATGCTGTATCTCGGATTCATGATTTTGTTTTG 2037
Query 358 TTGCTAAGAAATGAGGT-AAGTACAGGTCAGGAC-CCAGCTATTGAGGGAAATGATTTTG 415
||||||||||||||||| ||| ||||||||||| || |||||||||||||||||||||
Sbjct 2038 TTGCTAAGAAATGAGGTAAAG-GCAGGTCAGGACACC-TCTATTGAGGGAAATGATTTTG 2095
Query 416 CTGAATC-GATTGAGGGATTCTCCGTCACATTCAACCATGTTTTAAGAGGCGAT-AAAGA 473
|| | | ||||||||| ||||||||||| ||||||||||||||||| || ||| ||||
Sbjct 2096 TTG-AGCTGATTGAGGGCTTCTCCGTCACGTTCAACCATGTTTTAAGCGGTGATAAAAG- 2153
Query 474 TTTGGACGATTTTGTTTCGAATATTGCTAATGTGTTCAACGAGGCCATGGAGCTAAAGGT 533
|||||||||||||||||||||| |||||||||| ||||||||||| ||||||| |||||
Sbjct 2154 TTTGGACGATTTTGTTTCGAATCTTGCTAATGTCTTCAACGAGGCGATGGAGCGAAAGG- 2212
Query 534 TTA-TTTTTGGGGTCTTTCTTCATCCGAGGTGGAAATTTTGAGTCCAGATTGTATAGACA 592
| | |||| ||||||| |||| || ||||| |||| | ||||||||||||| |||||||
Sbjct 2213 TAAGTTTTAGGGGTCTAGCTTCCTCTGAGGTTGAAACTCTGAGTCCAGATTGCATAGACA 2272
Query 593 AGGTTGCATTACCCGAGAGCAAGGTTGTTGATAAAGATTCATCTCAAGAAATATATCAAA 652
|||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 2273 AGGTTGCATTACCCGAGAGCAAGGTTGTAGATAAAGATTCATCTCAGGAAATATATCAAA 2332
Query 653 ACGGATGTGTCTACAATGAGCCAGGGGTTCCATGCGATGAAAACAGAGTTTTGAGGTTAT 712
| ||||||||| |||| ||||||||||||||||| |||||||||||||||| ||| |||
Sbjct 2333 ATGGATGTGTCCACAACGAGCCAGGGGTTCCATGTGATGAAAACAGAGTTTC-AGGGTAT 2391
Query 713 GAATC 717
|||||
Sbjct 2392 GAATC 2396
Score = 272 bits (147), Expect = 3e-72
Identities = 217/248 (88%), Gaps = 15/248 (6%)
Strand=Plus/Plus
Query 62 AGATGGGAATGACGATTCTGGTAGTTGCAGTGGATCAT-TGTCGACAAATCCATCACAAC 120
||||||||||||||| |||||||| ||||| ||||| | |||| ||||| ||||||||||
Sbjct 1470 AGATGGGAATGACGACTCTGGTAGCTGCAGCGGATC-TCTGTCAACAAACCCATCACAAC 1528
Query 121 AGACCAAGAAGGAGAAGGAGGTGGCAGCCTTGGAGAGGGTTGCA-AGTG----T--T-A- 171
||| ||||||||||||||| ||||||||||||||||||||| | |||| | | |
Sbjct 1529 AGATCAAGAAGGAGAAGGACATGGCAGCCTTGGAGAGGGTTG-AGAGTGTTAATAGTCAT 1587
Query 172 G-T-AG-TTATGGAAGATTTTCTTGAAATGGAGAAGTTAGCTTGTTTGCCAAATCAATCT 228
| | || ||||||| |||||||| ||||||||||||||||||||||| ||||||| ||||
Sbjct 1588 GTTGAGCTTATGGATGATTTTCTAGAAATGGAGAAGTTAGCTTGTTTACCAAATCTATCT 1647
Query 229 AGCAGTAATGGTAGTATGGATTCCAAAGATTGTTCAGCTGATCAAAAGTCAGAAATGGTG 288
||||||||||||||||| ||||| |||||| |||||| ||||||||||||||||||||||
Sbjct 1648 AGCAGTAATGGTAGTATAGATTCTAAAGATGGTTCAGGTGATCAAAAGTCAGAAATGGTG 1707
Query 289 ATTCTTGA 296
||||||||
Sbjct 1708 ATTCTTGA 1715
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35616010223
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5