BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg923106

Length=254
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G47880.1 | Symbols:  | pseudogene, similar to NL0E, similar ...   126    8e-29


> AT1G47880.1 | Symbols:  | pseudogene, similar to NL0E, similar 
to disease resistance protein GB:BAB02103 GI:9294201 from 
(Arabidopsis thaliana); blastp match of 52% identity and 3.9e-11 
P-value to GP|4235643|gb|AAD13303.1||AF119040 NL0E {Lycopersicon 
esculentum} | chr1:17640046-17641148 FORWARD LENGTH=1103
Length=1103

 Score =  126 bits (68),  Expect = 8e-29
 Identities = 160/201 (80%), Gaps = 19/201 (9%)
 Strand=Plus/Plus

Query  71   TCCAACCAAGCTTCTTCAGCTAACCAAGTTGGTGTCTCTCGATCTTTCTTATT----CT-  125
            ||||||||||||||||||||||||||||||| |||||||| ||||||||| ||    || 
Sbjct  757  TCCAACCAAGCTTCTTCAGCTAACCAAGTTGTTGTCTCTCCATCTTTCTTCTTTGGGCTA  816

Query  126  TCTTTT---T-CC---ATCGATG-A-A-T-CTTTTCTTCGGCTACTTGCTCAAAACTTGA  174
            | ||||   | ||   ||| ||  | | | |||||||||  |||||||||| ||||||||
Sbjct  817  T-TTTTACATGCCTCTATCAATTTATAATTCTTTTCTTCATCTACTTGCTCGAAACTTGA  875

Query  175  GGAACCTTAGAGAACTGGATATGAGTTGGGTAAACATTTCCTCAGAAAT-TCCACGTTAG  233
            | |||||||||||| ||||||||||||  ||||||||||  ||| |||| ||| | | | 
Sbjct  876  GAAACCTTAGAGAATTGGATATGAGTTTCGTAAACATTTATTCATAAATCTCC-CATGAA  934

Query  234  TTGTCAAGCATGCGGTCTCTA  254
            || |||| ||||  |||||||
Sbjct  935  TTTTCAAACATGTAGTCTCTA  955



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 11561582270


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5