BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg923119
Length=988
Score E
Sequences producing significant alignments: (Bits) Value
AT1G47980.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 1581 0.0
> AT1G47980.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: endomembrane system; EXPRESSED IN: 6 plant
structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage,
petal differentiation and expansion stage, E expanded cotyledon
stage; BEST Arabidopsis thaliana protein match is:
unknown protein (TAIR:AT3G62730.1); Has 169 Blast hits to 169
proteins in 41 species: Archae - 0; Bacteria - 68; Metazoa
- 0; Fungi - 0; Plants - 101; Viruses - 0; Other Eukaryotes
- 0 (source: NCBI BLink). | chr1:17691834-17693867 REVERSE
LENGTH=1148
Length=1148
Score = 1581 bits (856), Expect = 0.0
Identities = 943/986 (96%), Gaps = 2/986 (0%)
Strand=Plus/Plus
Query 1 AAGCCAAAACATTTTTAGACATGGCAATCACAAAAGAGAGAAGAAGCTTGTTGGTTTCAA 60
|||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 30 AAGCCAAAACGTTTTTAGACATGGCACTCACAAAAGAGAGAAGAAGCTTGTTGGTTTCAA 89
Query 61 TGGTGATCGTAG-TCTTCTTCTTCAACTTTCACCATCTTCAAGTCATGAGTTGTCCAGAT 119
||||| | || | ||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 90 TGGTGTTGGT-GTTCTTCTTCTTCAACTTTCACCATCTTCAAGTCACGAGTTGTCCAGAT 148
Query 120 CCGGCAACGACCAACTGTACGGATCAGGACAGGAAATTATTGGAGTTTCCATTGAATTTA 179
| ||| ||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 149 CAGGCGACGACAAACTGTACGGACCAGGACAGGAAATTATTGGAGTTTCCATTGAATTTG 208
Query 180 GAGTACCTTGAAGCTGAGTTTTTCTTGTTCGGAGCATTAGGGTTTGGTCTTGATAAAGTC 239
||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||
Sbjct 209 GAGTACCTTGAAGCTGAGTTTTTCTTGTTCGGAGCGTTAGGGCTTGGTCTTGATAAAGTC 268
Query 240 GCACCAAATCTAACAATGGGAGGGCCAAGTCCTATTGGAGCTCAGAAAGCTAATCTTGAT 299
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 269 GCACCAAATCTAACAATGGGAGGGCCAAGTCCTATTGGAGCTCAGAAAGCCAATCTCGAT 328
Query 300 CCTTTGACAAGAGATATTATTTTGCAGTTTGCTTGGCAAGAGGTTGGCCACTTGAGGGCA 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 329 CCTTTGACAAGAGATATTATTTTGCAGTTTGCTTGGCAAGAGGTTGGCCACTTGAGGGCA 388
Query 360 ATCAAGAAAACGGTGAAAGGATTTGCAAGGCCACAACTTGATTTGAGTAAAAAAGCATTT 419
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 389 ATCAAGAAAACGGTGAAAGGATTTGCAAGGCCACAACTTGATTTGAGTAAGAAAGCATTT 448
Query 420 GCGAAAGTGATGGATAAAGCCTTTGGAGTGAAATTTGTGCCACCATTCAATCCTTATGCC 479
|| ||||||||||||||||| |||||||| ||||||||||| || |||||||||||||||
Sbjct 449 GCTAAAGTGATGGATAAAGCATTTGGAGTAAAATTTGTGCCGCCGTTCAATCCTTATGCC 508
Query 480 AATTCTTACAATTACCTCATTGCTTCTTATTTGGTACCTTATGTTGGTCTCACTGGATAC 539
||||||||||||||||||||||| || |||||||| ||||||||||||||||| ||||||
Sbjct 509 AATTCTTACAATTACCTCATTGCATCGTATTTGGTCCCTTATGTTGGTCTCACCGGATAC 568
Query 540 GTTGGCGCTAACCCTAAACTGCAATGTCCAGCCTCAAGAAAGTTAGTAGCAGGACTTTTG 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 569 GTTGGCGCTAACCCTAAACTGCAATGTCCAGCCTCAAGAAAGTTAGTAGCAGGACTTTTG 628
Query 600 GGAGTAGAATCGGGTCAAGATGCGGTAATAAGAGGAATGTTATACGCTCGGGCGGCACAC 659
|||||||||||||||||||| ||||| || ||||| |||||||| ||||| |||||||||
Sbjct 629 GGAGTAGAATCGGGTCAAGACGCGGTGATTAGAGGTATGTTATATGCTCGAGCGGCACAC 688
Query 660 ATAGTCTATCCTTATGGTGTCACTGTCGCGGCTTTCACGGATAAGATTTCTGATCTAAGG 719
||||||||||||||||||||||| || ||||||||||||||||||||||| |||||||||
Sbjct 689 ATAGTCTATCCTTATGGTGTCACGGTTGCGGCTTTCACGGATAAGATTTCGGATCTAAGG 748
Query 720 AACAAGTTGGGAAAAGCGGGAGTGAAAGATGAGGGATTGGTCGTACCTAAATTCATGGGT 779
||||| |||||||||||||| |||||||||||||||||| ||||||||||||||||||||
Sbjct 749 AACAAATTGGGAAAAGCGGGTGTGAAAGATGAGGGATTGATCGTACCTAAATTCATGGGT 808
Query 780 GCAGAAGGACAAGTGATTGGGAATGTATTGGTCGGTAATGAGTTCTCGCTTTCGTTTGAT 839
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 809 GCAGAAGGACAAGTGATTGGGAATGTATTGGTCGGTAATGAGCTCTCGCTTTCGTTTGAT 868
Query 840 AGAACACCTGAAGAGATTCTACGGATTGTGTATGGGAGTGGAAATGAAAGCGTTCCCGGT 899
||||||||||| ||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 869 AGAACACCTGAGGAGATTCTACGGATTGTGTATGGAAGTGGAAATGAAAGTGTTCCCGGT 928
Query 900 GGATTTTACCCTAAAGGAGCGGATGGAGAAATCGCTAAGTCTTATTTGGTTACTGTTGGG 959
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 929 GGATTTTACCCTAAAGGAGCGGATGGAGAAATCGCTAAGTCTTATTTGGTTACTGTCGGG 988
Query 960 AGTGAGTGAGGTTTAGTTTTGCTTTG 985
||||||||||||||||||||||||||
Sbjct 989 AGTGAGTGAGGTTTAGTTTTGCTTTG 1014
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48375483561
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5