BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg923128
Length=574
Score E
Sequences producing significant alignments: (Bits) Value
AT1G48020.1 | Symbols: PMEI1, ATPMEI1 | pectin methylesterase i... 928 0.0
> AT1G48020.1 | Symbols: PMEI1, ATPMEI1 | pectin methylesterase
inhibitor 1 | chr1:17716051-17716808 REVERSE LENGTH=758
Length=758
Score = 928 bits (502), Expect = 0.0
Identities = 546/567 (96%), Gaps = 3/567 (1%)
Strand=Plus/Plus
Query 10 AGAGAAAACAAGAATGGCTGCGAATCTAAGGAACAATGCGTTCTTGTCTTCTCTTATGTT 69
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 32 AGAGAAAACAAGAATGGCTGCGAATCTAAGGAACAATGCGTTCTTGTCTTCTCTCATGTT 91
Query 70 TCTTCTCTTAATCGGTTCCTCATACGCAATCACAAGTTCAGAAATGAGCACAATCTGTGA 129
||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 92 TCTTCTCTTGATCGGTTCATCATACGCAATCACAAGTTCAGAAATGAGCACAATCTGTGA 151
Query 130 CAAAACCTTAAACCCATCTTTCTGTCTTAAATTCCTCAATACTAAATTCGCATCTCCTAA 189
|||||||||||| ||||||||||||||||| ||||||||||| ||||||||||| |||||
Sbjct 152 CAAAACCTTAAATCCATCTTTCTGTCTTAAGTTCCTCAATACGAAATTCGCATCGCCTAA 211
Query 190 TCTTCAAGCCTTGGCAAAAACCACACTTGATGCTACACAAGCAAGAGCAACACAAACATT 249
||||||||||||||||||||||||||||||| |||||||||| ||||| |||||||| ||
Sbjct 212 TCTTCAAGCCTTGGCAAAAACCACACTTGATTCTACACAAGCGAGAGCTACACAAACGTT 271
Query 250 CAAA-AAACTCCAATCTATTATCGATGGAGGAGTCGACCCTCGATCTAAATTAGCTTACA 308
||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 272 -AAAGAAACTCCAATCTATTATCGATGGAGGAGTCGACCCTCGATCTAAGTTAGCTTACA 330
Query 309 GGTCATGCTTAGATGAATACGAGAGCGCGATTGGAAACCTCGAGGAAGCTTTTGAGCATT 368
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 331 GGTCATGCGTAGATGAATACGAGAGCGCGATTGGAAACCTCGAGGAAGCTTTTGAGCATT 390
Query 369 TAGCTTCAGGAGATGGCATGGGGATGAACATGAAAGTTTCTGCTGCATTGGATGGTGCTG 428
|||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 391 TAGCTTCAGGAGATGGTATGGGGATGAACATGAAAGTTTCTGCTGCATTGGATGGAGCTG 450
Query 429 ATACATGTTTAGATGATGTGAAGAGATTGAGATCAGTAGATGCTTCGGTTGTGAATAACA 488
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 451 ATACATGTTTAGATGATGTGAAGAGATTGAGATCAGTAGATTCTTCGGTTGTGAATAACA 510
Query 489 GTAAAGCAATTAAGAATCTTTGTGGTATTGCTCTTGTTATCTCTAACATGTTACCACGTA 548
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 511 GTAAAACAATTAAGAATCTTTGTGGTATTGCTCTTGTTATCTCTAACATGTTACCACGTA 570
Query 549 ATTAATTTTAAA-TCTTCATCATGTGT 574
|||||||| ||| ||||||||||||||
Sbjct 571 ATTAATTTGAAAATCTTCATCATGTGT 597
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27578546703
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5