BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg923145
Length=289
Score E
Sequences producing significant alignments: (Bits) Value
AT1G48195.1 | Symbols: | Zinc finger C-x8-C-x5-C-x3-H type fam... 438 1e-122
> AT1G48195.1 | Symbols: | Zinc finger C-x8-C-x5-C-x3-H type family
protein | chr1:17796335-17796784 FORWARD LENGTH=450
Length=450
Score = 438 bits (237), Expect = 1e-122
Identities = 267/282 (95%), Gaps = 0/282 (0%)
Strand=Plus/Plus
Query 8 GAGAAGAGAAAATATGTCCGACGGAAATTTCCCAGAACGTCCAGGCGAACCAGAGTGCAG 67
|||||||||||||||||| || | ||| ||||||||||||||||||||||||||||||||
Sbjct 2 GAGAAGAGAAAATATGTCTGAAGAAAAATTCCCAGAACGTCCAGGCGAACCAGAGTGCAG 61
Query 68 CTATTATCTTAGAACTGGAAACTGTTATCTGAAACAAAATTGCAAATACCATCACCCCAA 127
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 62 CTATTATCTTAGAACTGGAAACTGTTATCTGAAACAAAACTGCAAATACCATCACCCGAA 121
Query 128 GAATATAACGCCGAGAGAGCCTCCATGTCCTCTCAATGACAAGGGCTTACCATTAAGACC 187
||||||||||||||| ||||||| |||| |||||||||||||||||||||||||||||||
Sbjct 122 GAATATAACGCCGAGCGAGCCTCAATGTACTCTCAATGACAAGGGCTTACCATTAAGACC 181
Query 188 TGATCAAGCCATTTGCCCACATTACAGTCGCTTCGGCATTTGCAAATCCGGTCCGACTTG 247
|| ||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||
Sbjct 182 TGGTCAAGCCATTTGCCCGCATTACAGTCGCTTCGGCATTTGCAGATCCGGTCCGACTTG 241
Query 248 TAAATTCGACCATTCTACCTAACCATCATCCTCAGCTCGCAA 289
|||||||||||||| ||||||||||||||||||| || ||||
Sbjct 242 TAAATTCGACCATTTTACCTAACCATCATCCTCAACTTGCAA 283
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 13320953485
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5