BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg923150

Length=190
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G48230.1 | Symbols:  | nodulin MtN21 /EamA-like transporter ...   211    2e-54


> AT1G48230.1 | Symbols:  | nodulin MtN21 /EamA-like transporter 
family protein | chr1:17805761-17808885 FORWARD LENGTH=1760
Length=1760

 Score =  211 bits (114),  Expect = 2e-54
 Identities = 172/197 (87%), Gaps = 16/197 (8%)
 Strand=Plus/Plus

Query  1    ATATGCAGAGAGAGCATTATATGCACACAGTAGCAA-GCTCTCTCCCAGTTTCTGACTCA  59
            ||||||  |||||||||||||||||||||||||||| ||||||||| |||||||||||||
Sbjct  20   ATATGC--AGAGAGCATTATATGCACACAGTAGCAAAGCTCTCTCCAAGTTTCTGACTCA  77

Query  60   CTTCACCTGCTTCATCGATTCGCCATTGACGCAT-TTAT-CATCTTCTTCATCGG-AAAA  116
            ||||||||||||||||||||||||||||| || | |||  ||| || | |||||| ||||
Sbjct  78   CTTCACCTGCTTCATCGATTCGCCATTGAAGC-TCTTACGCAT-TTAT-CATCGGCAAAA  134

Query  117  TTTCTTGGAGTTATCGGAAAAAGTTTCGTCATCTACTACGGTG-TTC--GTATCTGATCC  173
             |||||||||||||||||||| ||||| ||||| |  |||||| ||   |||||||||||
Sbjct  135  CTTCTTGGAGTTATCGGAAAA-GTTTCTTCATC-A--ACGGTGGTTGAAGTATCTGATCC  190

Query  174  CTTTCGTTATGTTAAAC  190
            || ||| ||||||||||
Sbjct  191  CTCTCGCTATGTTAAAC  207



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 8400325617


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5