BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg923153
Length=1324
Score E
Sequences producing significant alignments: (Bits) Value
AT1G48260.1 | Symbols: CIPK17, SnRK3.21 | CBL-interacting prote... 1925 0.0
AT3G17510.1 | Symbols: CIPK1, SnRK3.16 | CBL-interacting protei... 913 0.0
> AT1G48260.1 | Symbols: CIPK17, SnRK3.21 | CBL-interacting protein
kinase 17 | chr1:17813976-17817283 REVERSE LENGTH=1606
Length=1606
Score = 1925 bits (1042), Expect = 0.0
Identities = 1247/1343 (93%), Gaps = 26/1343 (2%)
Strand=Plus/Plus
Query 3 ATCCGGAA-TCTGAATTGGATGGTGATAAAGGGAATGCTTGTTGGTAAATACGAGCTTGG 61
|||||||| ||| ||||||||||||||||||||||||| ||||||||| |||||||||||
Sbjct 39 ATCCGGAAGTCTAAATTGGATGGTGATAAAGGGAATGCGTGTTGGTAAGTACGAGCTTGG 98
Query 62 GAGGACACTTGGAGAGGGAAATTCCGCAAAGGTTAAATTCGCTATAGATACTATTTCCGG 121
||||||||| |||||||||||||||||||| |||||||| |||||||||||| || ||||
Sbjct 99 GAGGACACTCGGAGAGGGAAATTCCGCAAAAGTTAAATTTGCTATAGATACTCTTACCGG 158
Query 122 CGAACCATTCGCCATCAAAATCATCGATAAGTCGCGTATCACTCGTATTAACGTCTCTTT 181
|||| |||||||||||||||||||||| |||||| ||||||| ||| |||||||||||||
Sbjct 159 CGAATCATTCGCCATCAAAATCATCGAGAAGTCGTGTATCACACGTCTTAACGTCTCTTT 218
Query 182 TCAGATCAAGAGAGAGATTCGAACACTCAAAGTTTTAAAGCATCCAAACATTGTCAGATT 241
|||||| ||||||||||||||||||||||||||||| |||||||||||||||||| ||||
Sbjct 219 TCAGATTAAGAGAGAGATTCGAACACTCAAAGTTTTGAAGCATCCAAACATTGTCCGATT 278
Query 242 ACATGAGGTCTTGGCAAGCAAAACCAAGATTTACATGGTTCTGGAATGTGTCACTGGGGG 301
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 279 ACATGAGGTCTTGGCTAGCAAAACCAAGATTTACATGGTTCTGGAATGTGTCACTGGAGG 338
Query 302 AGACTTATTTGACAGAATTGTCTCCAAAGGAAAGCTTTCTGAAACAGAGGGACTAAAAAT 361
|||||||||||||||||||||||| |||||||||||||| |||||| | |||| ||||||
Sbjct 339 AGACTTATTTGACAGAATTGTCTCGAAAGGAAAGCTTTCGGAAACACAAGGACGAAAAAT 398
Query 362 GTTTCAGCAGTTGATTGATGGAATCAGCTATTGTCATAACAAGGGAGTTTTTCACAGAGA 421
|||||||||||||||||||||| |||||||||||||||||||||| ||||||||||| ||
Sbjct 399 GTTTCAGCAGTTGATTGATGGAGTCAGCTATTGTCATAACAAGGGCGTTTTTCACAGGGA 458
Query 422 TCTCAAGCTAGAGAATGTTCTTCTTGATGCAAAGGGTCACATTAAGATCACTGATTTTGG 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 459 TCTCAAGCTAGAGAATGTTCTTCTTGATGCAAAGGGTCACATTAAGATCACTGATTTTGG 518
Query 482 CCTTAGTGCTCTGCCTCAACATTTTAGGGAAGATGGGTTGCTACATACAACTTGTGGTAG 541
||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 519 CCTTAGTGCTCTGTCTCAACATTATAGGGAAGATGGGTTGCTACATACAACTTGTGGTAG 578
Query 542 TCCTAACTATGTCGCGCCTGAGGTTCTAGCTAACAAAGGG-TATGATGGTGCAGCATCAG 600
||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||
Sbjct 579 TCCTAACTATGTCGCGCCTGAGGTTCTAGCTAA-TGAGGGCTATGATGGTGCAGCATCAG 637
Query 601 ATATATGGTCATGTGGAGTAATCTTGTATGTTATTCTTACGGGATGTCTCCCTTTTGATG 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 638 ATATATGGTCATGTGGAGTAATCTTGTATGTTATTCTTACGGGATGTCTCCCTTTTGATG 697
Query 661 ATGCTAACCTTGCAGTTATTTGCCGGAAGATATTCAAAGGGGATCCCCCAATACCTAGAT 720
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 698 ATGCAAACCTTGCAGTTATTTGCCGGAAGATATTCAAAGGGGATCCCCCAATACCTAGAT 757
Query 721 GGATATCACCTGGT-GCTAAAACCATGATCAAGAGAATGCTTGATCC-AAGTCCAGTCAC 778
||||||||| ||| |||||||| ||||||||||||||||||||||| || |||||||||
Sbjct 758 GGATATCAC-TGGGAGCTAAAACTATGATCAAGAGAATGCTTGATCCTAA-TCCAGTCAC 815
Query 779 GAGGATGACAATCGCAAATATTAAGGCTAATGATTGGTTCAAACATGACTACACTCCTTC 838
|||| ||||||||||| ||| |||||| |||||||||| ||||||||||||||||||||
Sbjct 816 GAGGGTGACAATCGCAGGTATAAAGGCTCATGATTGGTTTAAACATGACTACACTCCTTC 875
Query 839 AAAATACGATGATGATGATGATGCATACTTAATCCAAGAAGATGG----ATC-TGAAG-A 892
||| |||||||| || ||||||| |||||| ||||||||||||| || ||||| |
Sbjct 876 AAACTACGATGACGACGATGATGTATACTTGATCCAAGAAGATGTTTTTATGATGAAGGA 935
Query 893 A---GAA-AAGAG-----CCCTGATTCTCCAACCATTATCAACGCATTTAAGTTGATTGG 943
| ||| ||||| ||||||||||||||||||||||||||| ||| ||||||||||
Sbjct 936 ATATGAAGAAGAGAAGAGCCCTGATTCTCCAACCATTATCAACGCTTTTCAGTTGATTGG 995
Query 944 AATGTCATCATTTCTCGACCTCTCAGGTTTCTTTGAGAAAGAGAAAGTATCAGAGAGACA 1003
|||||| || |||||||||||||||||||||||||||| ||||||| |||||||||| ||
Sbjct 996 AATGTCCTCGTTTCTCGACCTCTCAGGTTTCTTTGAGACAGAGAAATTATCAGAGAGGCA 1055
Query 1004 GATAAGATTCACGTCAAATAGCTTAGCCATAGATTTGTTGGAGAAAATCGAAACGATCTT 1063
||||||||||||||||||||| ||||| | ||||||||||||||| ||||||||||| ||
Sbjct 1056 GATAAGATTCACGTCAAATAGTTTAGCTAAAGATTTGTTGGAGAACATCGAAACGAT-TT 1114
Query 1064 T-ACAGAGATGGG-TTTCTGCTTACAGAAGAAACACGCAAGGTTAAAAGCAATCAAAGAA 1121
| || |||||||| ||| || |||||||||||||| |||| |||||||||||||||||||
Sbjct 1115 TCACGGAGATGGGCTTT-TGTTTACAGAAGAAACATGCAAAGTTAAAAGCAATCAAAGAA 1173
Query 1122 GAAAGCACTCAAAAAGGGCAATGCGGTTTATCAGTAACGGCTGAGGTTTTCGAGATAAGT 1181
||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1174 GAAAGCACTCAAAAAAGGCAATGCGGTTTATCGGTAACGGCTGAGGTTTTCGAGATAAGT 1233
Query 1182 CCGTCCCTAAATGTGGTTGAACTAAGAAAATCACATGGTGATTTGTCTCTATATAAACAG 1241
|||||||| ||||||||||||||||||||||||||||| |||| ||||||||||||||||
Sbjct 1234 CCGTCCCTGAATGTGGTTGAACTAAGAAAATCACATGGCGATTCGTCTCTATATAAACAG 1293
Query 1242 TTGTACGAGAGATTATTGAATGAACTGGGCTCATCATCACAAGTACAGGAGCTTTTAACG 1301
||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||| ||
Sbjct 1294 TTGTACGAGCGATTATTGAATGAGCTGGGCTCATCATCACAAGTACAGGAGCTTTTAGCG 1353
Query 1302 TAGCCAATAGCAGAAAATATGTC 1324
|||||||||||||||| ||||||
Sbjct 1354 TAGCCAATAGCAGAAATTATGTC 1376
> AT3G17510.1 | Symbols: CIPK1, SnRK3.16 | CBL-interacting protein
kinase 1 | chr3:5988991-5992912 REVERSE LENGTH=1938
Length=1938
Score = 913 bits (494), Expect = 0.0
Identities = 1043/1298 (80%), Gaps = 78/1298 (6%)
Strand=Plus/Plus
Query 30 AAGGGAATGCTTGTTGGTAAATACGAGCTTGGGAGGACACTTGGAGAGGG-AAATTCCGC 88
|||||||||| | | || ||||||||||| |||||||| || || ||||| || ||| |
Sbjct 322 AAGGGAATGCGTCTGGGGAAATACGAGCTAGGGAGGACGCTCGGCGAGGGTAATTTCGGT 381
Query 89 AAAGGTTAAATTCGCTATAGATACTATTTCCGG-CGA-ACCATTCGCCATCAAAATCATC 146
||| ||||||||||||| |||||| | ||||| | | || |||||| | |||||||||
Sbjct 382 AAA-GTTAAATTCGCTAAAGATACCGTCTCCGGTC-ATTCC-TTCGCCGTTAAAATCATC 438
Query 147 GATAAGTCGCGTATCACTCGTAT-T-AACGTCTCTTTTCAGATCAAGAGAGAGATTCGAA 204
|| ||||| |||||| | || || | ||| |||| || ||||| || |||||||| || |
Sbjct 439 GACAAGTCTCGTATCGC-CG-ATCTCAACTTCTCCTTACAGATAAAAAGAGAGATCCGGA 496
Query 205 CACTCAAAGT-TTTAAAGCATCCAAACATTGTCAGATTACATGAGGTCTTGGCAAGCAAA 263
| || ||| | || ||| ||||| ||||||| |||||||||||||||||||| ||||||
Sbjct 497 CTCTGAAAATGTTGAAA-CATCCCCACATTGTTAGATTACATGAGGTCTTGGCTAGCAAA 555
Query 264 ACCAAGATTTACATGGTTCTGGAA-TGTGTCACTGGGGGAGACTTATTTGACAGAATTGT 322
|| || ||| | ||||| ||||| | ||| || || ||||| || || |||||||||||
Sbjct 556 ACGAAAATTAATATGGTAATGGAACT-TGTTACCGGAGGAGAATTGTTCGACAGAATTGT 614
Query 323 CTCCAAAGGAAAGCTT-TCTGAAACAGAGGGACTAAAAATGTTTCAGCAG-TTGATTGAT 380
||||| ||||| || | ||||| || ||| |||||||||||||||| || || |||
Sbjct 615 TTCCAACGGAAA-ATTAACAGAAACTGATGGAAGAAAAATGTTTCAGCAGCTT-ATCGAT 672
Query 381 GGAATCAGCTATTGTCATAACAAGGGAGTTTTTCACAGAGATCTCAAGCTAGAGAATGTT 440
||||||||||| ||||||| ||| || ||||| ||||| |||||||||||||||||||||
Sbjct 673 GGAATCAGCTACTGTCATAGCAAAGGTGTTTTCCACAGGGATCTCAAGCTAGAGAATGTT 732
Query 441 CTTCTTGATGCAAAGGGTCACATTAAGATCACTGATTTTGGCCTTAGTGCTCTGCCTCAA 500
||||||||||||||||| || || |||||||||||||||||||| ||||||||||||||
Sbjct 733 CTTCTTGATGCAAAGGGACATATAAAGATCACTGATTTTGGCCTCAGTGCTCTGCCTCAG 792
Query 501 CATTTTAGGGAAGATGGGTTGCTACATACAACTTGTGGTAGTCCTAACTATGTCGCGCCT 560
||||||||||| || || ||| | |||||||| ||||| |||||||| || || ||||||
Sbjct 793 CATTTTAGGGATGACGGATTGTTGCATACAACCTGTGGAAGTCCTAATTACGTTGCGCCT 852
Query 561 GAGGTTCTAGCTAACAAAGGGTATGATGGTGCAGCATCAGATATATGGTCATGTGGAGTA 620
|||||| ||||||||| ||| || ||||||||||||||||| |||||||| ||||| |||
Sbjct 853 GAGGTTTTAGCTAACAGAGGCTACGATGGTGCAGCATCAGACATATGGTCCTGTGGTGTA 912
Query 621 ATCTTGTATGTTATTCTTACGGGATGTCTCCCTTTTGATGAT-GCTAACCTTGCAGTTAT 679
||||||||||| ||||| || |||||||| ||||| || || | |||||||||||| |
Sbjct 913 ATCTTGTATGTGATTCTAACCGGATGTCTTCCTTTCGACGACAGA-AACCTTGCAGTTCT 971
Query 680 TTGCCGGAAGATAT-TCAAAGGGGATCCC-CCAATACCTAGATGGATATCACCTGGTGCT 737
|| || |||||||| | ||||| || ||| |||||||| |||||| |||| || |||||
Sbjct 972 TTACCAGAAGATATGT-AAAGGAGA-CCCACCAATACCAAGATGGTTATCCCCGGGTGC- 1028
Query 738 AA-AACCATGATCAAGAGAATGCTTGATCCAAGTCCAGTCACGAGGATGACAATCGCAAA 796
|| ||||||||| ||||||||||||||||||| ||||||||||||||| ||| | |
Sbjct 1029 AAGAACCATGATTAAGAGAATGCTTGATCCAAATCCAGTCACGAGGATCACAGTTGTGGG 1088
Query 797 TATTAAGGCTAATGATTGGTTCAAACATGACTACACTCCTTCAAAATAC-GATGATGATG 855
|||||| || | || |||||||||| ||| |||| |||||||| | | ||||||||||
Sbjct 1089 TATTAAAGCCAGCGAGTGGTTCAAACTTGAGTACATTCCTTCAAT-TCCCGATGATGATG 1147
Query 856 ATGA--------T-G-CA-------T-A--CTT----AATCCAAGAAGAT-GGATCTGAA 890
| || | | || | | ||| |||||||||| | ||||| |||
Sbjct 1148 ACGAAGAAGAAGTTGACACAGACGATGATGCTTTCTCAATCCAAGAAC-TCGGATCAGAA 1206
Query 891 GAAGAAAAGAGCCCTGATTCTCCAACCATTATCAACGCATTTAAGTTGATTGGAATGTCA 950
|||| ||| || |||||| || ||||| ||||| || ||| |||| || ||||||||
Sbjct 1207 GAAGGGAAGGGCAGTGATTCACCGACCATCATCAATGCGTTTCAGTTAATCGGAATGTCT 1266
Query 951 TCATTTCTCGACCTCTCAGGTTTCTTTGAGA-AAGAGAAAGTATCAGAGAGACAGA-TAA 1008
|| ||||| ||||| || ||||||||||| | ||||||| ||||||||||| ||| |||
Sbjct 1267 TCCTTTCTTGACCTGTCCGGTTTCTTTGA-ACAAGAGAATGTATCAGAGAGG-AGAATAA 1324
Query 1009 GATTCACGTCAAATAGCTTAGCCATAGATTTGTTGGAGAAAATCGAAACGATCT-TTACA 1067
||||||| |||||||||| ||| | |||||| |||||||||||||||| | | |||||
Sbjct 1325 GATTCACTTCAAATAGCTCAGCAAAAGATTTACTGGAGAAAATCGAAAC-AGCCGTTACA 1383
Query 1068 GAGATGGGTTTCTGCT-TACAGAAGAAACACGC-AAGGTTAAAAGCAAT-CAAAGAAGAA 1124
|| ||||| ||| | | |||| |||||||| || ||| |||| || || ||| ||||||
Sbjct 1384 GAAATGGGATTCAG-TGTACAAAAGAAACATGCCAAG-TTAAGAGTAAAACAA-GAAGAA 1440
Query 1125 AGCA-CTCAAAAAGGGCAA-TGCGGTTTATCAGTAACGGCTGAGGTTTTCGAGATAA-GT 1181
|| | | || ||||| ||| | |||||||||||||| ||||||||||||||||||| |
Sbjct 1441 AGAAAC-CAGAAAGGTCAAGTT-GGTTTATCAGTAACAGCTGAGGTTTTCGAGATAAAG- 1497
Query 1182 CCGTCCCTAAATGTGGTTGAACTAAGAAAATCACATGGTGATT--TGTCTCTATATAAAC 1239
||||| || || |||||||| ||||||||||| |||| |||| ||| | |||||| ||
Sbjct 1498 CCGTCACTGAACGTGGTTGAGCTAAGAAAATCTTATGGCGATTCATGT-T-TATATAGAC 1555
Query 1240 AGTTGTACGAGAGATTATTGAATGAAC-TGGGCTCATC 1276
|||||||||||||| |||| || || | ||||| ||||
Sbjct 1556 AGTTGTACGAGAGACTATTAAAAGA-CGTGGGCACATC 1592
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65160307410
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5