BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg923155
Length=1026
Score E
Sequences producing significant alignments: (Bits) Value
AT1G48270.1 | Symbols: GCR1 | G-protein-coupled receptor 1 | ch... 1628 0.0
> AT1G48270.1 | Symbols: GCR1 | G-protein-coupled receptor 1 |
chr1:17827953-17830420 REVERSE LENGTH=1464
Length=1464
Score = 1628 bits (881), Expect = 0.0
Identities = 974/1020 (95%), Gaps = 1/1020 (0%)
Strand=Plus/Plus
Query 2 GTTTTGAAATCACAGATAACAATGTCGGCGGTACTCACAGCCGGCGGAGGCTTAACTGCC 61
|||||| ||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 186 GTTTTGGAATCACATATAACAATGTCGGCGGTTCTCACAGCCGGCGGAGGCTTAACTGCC 245
Query 62 GGAGATCGCAGCATTATTACGGCGATTAACACCGGCGCTTCGAGTCTCTCATTCGTCGGC 121
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 246 GGGGATCGCAGCATTATTACGGCGATTAACACCGGCGCTTCGAGTCTCTCATTCGTCGGC 305
Query 122 TCAGCCTTCATCGTTCTCTGCTATTGCCTCTTCAAAGAACTTCGAAAATTCTCTTTCAAG 181
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 306 TCAGCCTTCATCGTTCTCTGCTACTGCCTCTTCAAAGAACTTCGAAAATTCTCTTTCAAG 365
Query 182 CTCGTCTTCTACCTTGCTCTCTCTGATATGCTTTGCAGTTTCTTCCTTATCGTTGGGGAT 241
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 366 CTCGTCTTCTACCTTGCTCTCTCTGATATGCTTTGCAGTTTCTTCCTAATCGTTGGGGAT 425
Query 242 CCTTCAAAGGGGTTTATTTGTTATGCACAAGGATACACCACTCATTTCTTCTGCGTTGCT 301
|||||||||||||| |||||||| |||||||| ||||| |||||||||||||||||||||
Sbjct 426 CCTTCAAAGGGGTTCATTTGTTACGCACAAGGCTACACTACTCATTTCTTCTGCGTTGCT 485
Query 302 TCGTTCTTGTGGACAACTACAATTGCTTTCACTCTTCATCGTACTGTGGTTAAGCATAAA 361
||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 486 TCGTTCTTGTGGACAACTACAATTGCTTTCACTCTTCATCGTACTGTTGTCAAGCATAAA 545
Query 362 ACTGATGTGGAGGATTTGGAAGCTTTGTTTCATTTGTATGTTTGGGGAACTTCGTTGGTT 421
||||||||||||||||||||||| |||||||||||||||| ||||| ||||| ||||||
Sbjct 546 ACTGATGTGGAGGATTTGGAAGCAATGTTTCATTTGTATGTATGGGGGACTTCCTTGGTT 605
Query 422 GTGACTGTCATACGTTCTTTTGGTAATAACCACTCACATTTGGGGCCGTGGTGCTGGACA 481
|||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 606 GTGACTGTCATACGTTCTTTTGGTAACAACCACTCACATTTGGGGCCATGGTGCTGGACG 665
Query 482 CAAACTGGTCTTAAGGGGAAGGCTGTTCATTTCTTAACTTTCTACGCTCCTCTTTGGGGT 541
||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 666 CAAACTGGTCTTAAGGGAAAGGCTGTTCATTTTTTAACTTTCTACGCTCCTCTTTGGGGA 725
Query 542 GCCATTCTTTACAATGGCTTTACTTACTTCCAGGTGATACGGATGCTAAGAAATGCTAGA 601
||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 726 GCCATTCTTTACAATGGGTTTACTTACTTCCAAGTGATACGGATGCTAAGAAATGCTAGA 785
Query 602 CGTATGGCAGTTGGAATGTCAGACCGAGTAGATCAGTTTGACAATAGAGCAGAGTTAAAG 661
||||||||||||||||||||||||||||| ||||| ||||| ||||||||||||||||||
Sbjct 786 CGTATGGCAGTTGGAATGTCAGACCGAGTCGATCAATTTGATAATAGAGCAGAGTTAAAG 845
Query 662 GTGTTGAACCGATGGGGATACTATCCGCTCATTCTAATAGGATCATGGGCATTCGGCACT 721
||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 846 GTGTTGAACAGATGGGGATACTATCCACTCATTCTAATAGGATCATGGGCATTCGGCACT 905
Query 722 ATCAACCGCATTCATGATTTCATCGAGCCAGGCCATAAGATCTTCTGGCTCTCAGTTCTT 781
|| ||||| || |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 906 ATTAACCGTATCCATGATTTCATCGAGCCAGGGCATAAGATCTTCTGGCTCTCAGTTCTT 965
Query 782 GACGTTGGGACAGCTGCATTAATGGGCTTGTTCAATTCAATAGCCTATGGTTTCAACAGC 841
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 966 GACGTTGGGACAGCTGCACTAATGGGCTTGTTCAATTCAATAGCCTATGGTTTCAACAGC 1025
Query 842 TCAGTGCGCCGAGCAATCCATGAAAGACTAGAACTGTTCTTGCCGGAACGGATATATCGA 901
|||||||| |||||||||||||| ||||| || || |||||||| |||||| ||||||||
Sbjct 1026 TCAGTGCGTCGAGCAATCCATGAGAGACTGGAGCTATTCTTGCCAGAACGGCTATATCGA 1085
Query 902 TGGTTTCCGAGCAATTTCAGACCAAAAAGCCATCTGATTCTACATCAGCAACAACAACAG 961
||| |||| ||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1086 TGGCTTCCAAGCAATTTCAGACCAAAAAACCATCTGATTCTACATCAGCAACAACAACAG 1145
Query 962 CGAAGCGAAATGGTATCACTCAAGACCGAGGACCAGCAATGACACTAACTTTCAAC-AAT 1020
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1146 CGAAGCGAAATGGTATCACTCAAGACCGAGGACCAGCAATGACACTAACTTTCAACTAAT 1205
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50284381147
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5