BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg923157

Length=284
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G54250.1 | Symbols: ATRPABC16.5, NRPB8A, NRPE8A | RNA polyme...   161    3e-39
  AT3G59600.1 | Symbols: NRPB8B, NRPD8B, NRPE8B | RNA polymerase ...   128    3e-29


> AT1G54250.1 | Symbols: ATRPABC16.5, NRPB8A, NRPE8A | RNA polymerase 
Rpb8 | chr1:20254938-20256557 FORWARD LENGTH=770
Length=770

 Score =  161 bits (87),  Expect = 3e-39
 Identities = 97/102 (95%), Gaps = 0/102 (0%)
 Strand=Plus/Plus

Query  60   AGTTACTCGCTTTCAAGCTACGAGCCACAACTTGGAAATGTTTATGCATTTAGAGGTTAA  119
            |||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct  185  AGTTACTCGCGTTCAAGCTACGAGCCACAACTTGGAAATGTTTATGCATTTAGATGTTAA  244

Query  120  CACAGAGGTTTATCAATTTGCTGTTGGTGATAAGTTCACACT  161
             ||||||||||||| ||| |||||||||||||||||||||||
Sbjct  245  TACAGAGGTTTATCCATTGGCTGTTGGTGATAAGTTCACACT  286


> AT3G59600.1 | Symbols: NRPB8B, NRPD8B, NRPE8B | RNA polymerase 
Rpb8 | chr3:22016385-22018100 FORWARD LENGTH=749
Length=749

 Score =  128 bits (69),  Expect = 3e-29
 Identities = 90/100 (90%), Gaps = 2/100 (2%)
 Strand=Plus/Plus

Query  60   AGTTACTCGCT-TTCAAGCTACGAGCCACAACTTGGAAATGTTTATGCATTTAGAGGTTA  118
            |||||| || | || |||| | ||||||||||||||||||||||||||||||||| ||||
Sbjct  209  AGTTACGCG-TGTTGAAGCAAGGAGCCACAACTTGGAAATGTTTATGCATTTAGATGTTA  267

Query  119  ACACAGAGGTTTATCAATTTGCTGTTGGTGATAAGTTCAC  158
            |||| |||||||||| ||| ||||||||||||||||||||
Sbjct  268  ACACTGAGGTTTATCCATTGGCTGTTGGTGATAAGTTCAC  307



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 13069614740


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5