BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg923159
Length=2062
Score E
Sequences producing significant alignments: (Bits) Value
AT1G48310.1 | Symbols: CHR18, CHA18 | chromatin remodeling fact... 3206 0.0
> AT1G48310.1 | Symbols: CHR18, CHA18 | chromatin remodeling factor18
| chr1:17848421-17853807 REVERSE LENGTH=2297
Length=2297
Score = 3206 bits (1736), Expect = 0.0
Identities = 1952/2056 (95%), Gaps = 15/2056 (1%)
Strand=Plus/Plus
Query 4 GGAGAGCGAAGATCAAAATGGATGA---CTGGGATGATTTGACTGTGGAAGAGATGGATG 60
|||||| ||| |||||||||||||| || || |||||||||||||||||||||||||
Sbjct 60 GGAGAGGGAATATCAAAATGGATGATTTCT-GG--GATTTGACTGTGGAAGAGATGGATG 116
Query 61 CTATTGAAAAAGAAGCTCTTCAGAGACTCAACCAGCAACGCAATTCCTCTTCTTCTTCTT 120
|||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 117 CTATTGAAAACGAAGCTCTTCAGAGAATCAACCAGCAACGCAATTCCTCTTCTTCTTCTT 176
Query 121 CCTTGCCAATTCCCAACGAGGTTCATGCTTCGTCTCAAGGAGCCAGAATCTTACCTTCAA 180
| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 177 CATTGCCAATTCCCAACGAGGTTCATACTTCGTCTCAAGGAGCCAGAATCTTACCTTCAA 236
Query 181 CTCTCTCCCCTAAACCAAACACTGATGCGGGCTTTAAGCCACAGGAGCAAAAGGTCTCTG 240
||||| |||||||||| ||||||||||| |||| ||||||||| ||||||||||||||||
Sbjct 237 CTCTCGCCCCTAAACCGAACACTGATGCTGGCTCTAAGCCACAAGAGCAAAAGGTCTCTG 296
Query 241 TCAAAATTTTCCTTCA-TCATAGTGGAGTTCTTGCTGCAAAGTTCCCATATAACCAGGTG 299
|||||||||| ||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 297 TCAAAATTTTGCTTCATTC-TAGTGGAGTTCTTGCTGCAAAGTTCCCATATAACCAGGTG 355
Query 300 GTGGTAGATTCTGTGCGTAAAATCCCTAAGGCTATTTGGAATGCTAAAGAAAGGTTATGG 359
||||| ||| |||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 356 GTGGTGGATGCTGTGCGTAAAATCCCTAAGGCCATTTGGAATGCTAAAGAAAGGTTATGG 415
Query 360 ACCTTTCCTCATTCTTCACTGTCATCAGCAGACAATATCCTACGAGAAATTTCCAGCGTT 419
||||||||||||||||||||||| |||||||| ||||| |||||||||||||||||||||
Sbjct 416 ACCTTTCCTCATTCTTCACTGTCTTCAGCAGAAAATATTCTACGAGAAATTTCCAGCGTT 475
Query 420 AAAGTTGAGATAGAGAACTTAGATCCTCTTGTGCAACGTGCAATAGCTTCTGCCTCAAGA 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 476 AAAGTTGAGATAGAGAACTTAGATCCTCTTGTGCAACGTGCAATAGCTTCTGCCTCAAGA 535
Query 480 GTTCCAGATCTACGGCATCTGTATGAAAAGATACCAAGCCATATTGAGCCAAAGCTTCTT 539
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 536 GTTCCGGATCTACGGCATCTGTATGAAAAGATACCAAGCCATATTGAGCCAAAGCTTCTT 595
Query 540 CCATTTCAGCGAGAAGGCATAGAGTTTATTTTACAGCATGGAGGACGTGTGCTCCTAGCA 599
|| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 596 CCTTTTCAGCGAGAAGGCATAGAGTTTATTTTACAGCACGGAGGACGTGTGCTCCTAGCA 655
Query 600 GATGAAATGGGTCTTGGAAAGACTTTGCAGGCAATTGCTGTGACAACATGCGTTCATGAA 659
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 656 GATGAAATGGGTCTGGGAAAGACTTTGCAGGCAATTGCTGTGACAACATGCGTTCAGGAA 715
Query 660 TCTTGGCCAGTTCTGATTATTGCACCATCTTCATTACGTTTACATTGGGCAACAATGATT 719
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 716 TCTTGGCCGGTTCTGATTATTGCACCATCTTCATTACGTTTACATTGGGCAACAATGATT 775
Query 720 CACCAATGGCTGCATGTACCTCCGTCAGACATAGTTGTAGTTTTACCACAACCAGGTGGT 779
||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 776 CACCAATGGCTGCATGTGCCTCCGTCAGACATAGTTGTAGTTTTACCTCAACCAGGTGGA 835
Query 780 TCAAACAAGTGCGG-TTATACTATAGTTTCCTCAAATACAAAGGGCACAATCCATCTTGA 838
|||||||||||||| || |||||||||||||||||| |||||||||||||||||||||||
Sbjct 836 TCAAACAAGTGCGGATT-TACTATAGTTTCCTCAAACACAAAGGGCACAATCCATCTTGA 894
Query 839 TGGTGTCTTCAATATTGTTTCCTATGATGTGGTCACTAAGCTGGACAAACTCCTAATGGC 898
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 895 TGGTGTCTTCAATATTGTTTCCTATGATGTGGTCACTAAGCTGGACAAACTCTTAATGGC 954
Query 899 GTTGGACTTTAAGGTTGTTATTGCAGACGAATCACATTATCTTAAAAACGCTCAAGCAAA 958
|||||||||||||| ||||| |||||||||||||||| ||||||||||| |||||||||
Sbjct 955 ATTGGACTTTAAGGTCGTTATAGCAGACGAATCACATTTTCTTAAAAACGGTCAAGCAAA 1014
Query 959 GAGGACCAGTGCTTGCCTTCCAGTCATAAAGAAAGCTCAATATGCAATCCTTCTGAGTGG 1018
|||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1015 GAGGACAAGTGCTTGCCTTCCAGTCATAAAGAAAGCTCAATATGCCATCCTTCTGAGTGG 1074
Query 1019 AACCCCTGCATTATCTAGACCGATAGAGCTATTCAAACAGCTGGAAGCTCTATACCCAGA 1078
||| ||||| ||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 1075 AACTCCTGCTTTATCTAGACCAATAGAGCTATTCAAACAGCTGGAAGCTCTATATCCAGA 1134
Query 1079 TGTTTATAGAAATGTTCATGAATATGGTAGCAGATACTGCAAAGGCGGATTTTTTGGAGC 1138
||||||||||||| |||||||||| ||| ||||||||||||||||||||||||||||| |
Sbjct 1135 TGTTTATAGAAATATTCATGAATACGGTGGCAGATACTGCAAAGGCGGATTTTTTGGAAC 1194
Query 1139 ATATCAAGGCGCAAGCAATCATGAAGAGTTGCACAATTTGATGAAGGCAACAGTGATGAT 1198
|||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 1195 ATATCAAGGCGCAAGCAATCATGACGAGTTGCACAATTTGATGAAGGCAACAGTCATGAT 1254
Query 1199 TCGAAGACTTAAAAAGGATGTCTTGACTGAACTTCCGTCAAAGCGCAGGCAGCAGGTCTT 1258
| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1255 TAGAAGACTTAAAAAGGATGTCTTAACTGAACTTCCGTCAAAGCGCAGGCAGCAGGTCTT 1314
Query 1259 CCTAGATTTAGCTG-AAAAGGATATGAAGCAAATCAATGCTTTGTTTCATGAGTTAAGGG 1317
|||||||||||||| |||| || |||||||||||||| ||||||||||||||||||| ||
Sbjct 1315 CCTAGATTTAGCTGCAAAA-GACATGAAGCAAATCAACGCTTTGTTTCATGAGTTAAAGG 1373
Query 1318 TGGTAAAGTCAAAAATTAAGGATTGTGTATCGGAAGATGACATTAAATCTCTTAAATTTA 1377
||||||||||||||||||||||||| |||| |||||||||||||||||||| |||||||
Sbjct 1374 TGGTAAAGTCAAAAATTAAGGATTGCATATCAGAAGATGACATTAAATCTCTGAAATTTA 1433
Query 1378 CAGAGAAGAACCTTATCAACAAGATCTACACTGATTCCGCTGGGGCCAAAATCCCAGCAG 1437
||||||||||||||| |||||||| ||||||||||| |||| ||||||||||||||||
Sbjct 1434 TAGAGAAGAACCTTATTAACAAGATTTACACTGATTCGGCTGTAGCCAAAATCCCAGCAG 1493
Query 1438 TGCTTGATTATCTGGGAACTGTGCTTGAGGCTGGCTGCAAATTTCTGGTATTTGCCCATC 1497
||||||| ||||||| || |||| ||||||||||||||||||||||||| ||||| ||||
Sbjct 1494 TGCTTGACTATCTGGAAAATGTGATTGAGGCTGGCTGCAAATTTCTGGTGTTTGCACATC 1553
Query 1498 ATCAGTCCATGCTTGATGCAA-TACACCAGTTTCTTaaaaaaaaGAAAGTGGGCTGCATC 1556
|||||||||||||||| | || ||||||||||||||||||||||||||||||||||||||
Sbjct 1554 ATCAGTCCATGCTTGA-GGAATTACACCAGTTTCTTAAAAAAAAGAAAGTGGGCTGCATC 1612
Query 1557 CGGATTGATGGTAGCACCCCTGCCTCCTCTAGACAAGCCTTGGTTTCTGACTTTCAGGAT 1616
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1613 CGGATTGATGGTAGCACCCCTGCCTCCTCTAGGCAAGCCTTGGTTTCTGACTTTCAGGAT 1672
Query 1617 AAGGATGAGATAAAAGCAGCTGTGCTGTCAATACGAGCTGCTGGTGTTGGGATAACATTA 1676
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 1673 AAGGATGAGATAAAAGCAGCAGTGCTGTCAATACGAGCTGCTGGTGTTGGGATAACTTTG 1732
Query 1677 ACAGCAGCAAGCACTGTTATCTTTGCAGAGTTGGCATGGACTCCGGGTGACCTGATTCAG 1736
||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1733 ACAGCCGCAAGCACTGTTATCTTTGCAGAGTTGTCATGGACTCCGGGTGACCTGATTCAG 1792
Query 1737 GCAGAAGATCGTGCACATAGGATTGGTCAGGTCTCTTCAGTAAACATACATTACCTTTTA 1796
|||||||||||||||||||||||||||||||| |||||||||||||| || |||||||||
Sbjct 1793 GCAGAAGATCGTGCACATAGGATTGGTCAGGTTTCTTCAGTAAACATTCACTACCTTTTA 1852
Query 1797 GCAAATGACACTGTTGACGACATCATCTGGGATGTTGTTCAGAGCAAGCTGGATAATCTA 1856
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1853 GCAAATGACACTGTTGACGACATCATCTGGGATGTTGTTCAGAGCAAGCTGGATAATCTA 1912
Query 1857 GGACAGATGCTTGATGGGCAGGAGAATGCTTTGGAGGTTTCATCTAGTCATATGATGAGC 1916
|||||||||||||||||||| |||||||||||||| ||| ||||||||||||||||||||
Sbjct 1913 GGACAGATGCTTGATGGGCAAGAGAATGCTTTGGATGTTGCATCTAGTCATATGATGAGC 1972
Query 1917 AGTCCAACAAAACCAAGAAACAGCCCCACAAAGCAGCAAACTCTAGAGCCGTTCTTGAAG 1976
||||||||||||||||||||||||||||| |||||||||||| |||| ||||||||||||
Sbjct 1973 AGTCCAACAAAACCAAGAAACAGCCCCACGAAGCAGCAAACTTTAGAACCGTTCTTGAAG 2032
Query 1977 CGCTGCAAAAAATTAGAGGACGATACCGAGGAACATCAACCCAGGCCCAAAGTTCCCAGA 2036
|||||||||| |||||| ||||| ||||||||||||||||||| ||||||||||||||||
Sbjct 2033 CGCTGCAAAAGATTAGATGACGACACCGAGGAACATCAACCCATGCCCAAAGTTCCCAGA 2092
Query 2037 CACTGAAACTA-AAAA 2051
||||||||| ||||
Sbjct 2093 TTCTGAAACTATAAAA 2108
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 102208309620
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5