BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg923168

Length=805
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G18150.1 | Symbols:  | RNI-like superfamily protein | chr3:6...   191    1e-47
  AT2G04150.1 | Symbols:  | pseudogene of F-box family protein | ...   135    5e-31


> AT3G18150.1 | Symbols:  | RNI-like superfamily protein | chr3:6217929-6219500 
FORWARD LENGTH=1371
Length=1371

 Score =  191 bits (103),  Expect = 1e-47
 Identities = 143/162 (88%), Gaps = 4/162 (2%)
 Strand=Plus/Plus

Query  591   ATTTTATCTC-TTGCCGAGGTTCGTGGTGTTCCTTTTCCGATGTTGAAAGTGAAATATTT  649
             |||||||| | |||||||| |||||||||| ||||| |||||||| || |||||| ||||
Sbjct  922   ATTTTATC-CGTTGCCGAGCTTCGTGGTGTCCCTTTCCCGATGTTCAAGGTGAAAGATTT  980

Query  650   GACTCTTGAGACTGTAATCTTCCGGTATGTTATTCCTGGTATAGAAAGAGTGTTACAAAA  709
             |||||| ||||| || ||||| | ||||||||||||||||||||||||||||||||||||
Sbjct  981   GACTCTCGAGACAGTCATCTTTCAGTATGTTATTCCTGGTATAGAAAGAGTGTTACAAAA  1040

Query  710   CTCACCTGATTTAAA-ACAGCTAACAGTACACGCAAAGAATT  750
             ||||||||||||||| | |||||||| ||| | ||||| |||
Sbjct  1041  CTCACCTGATTTAAAGA-AGCTAACATTACTCACAAAGGATT  1081


> AT2G04150.1 | Symbols:  | pseudogene of F-box family protein 
| chr2:1400044-1401282 FORWARD LENGTH=1239
Length=1239

 Score =  135 bits (73),  Expect = 5e-31
 Identities = 135/163 (83%), Gaps = 11/163 (7%)
 Strand=Plus/Plus

Query  594  TTATCT-CTTGCCGAGGTTCGTGGTGTTCCTTTTCCGATGTTGAAAGTGAAATATTTGAC  652
            |||||| | || |||| ||||||||||||||||||||||||| || || || | ||||||
Sbjct  648  TTATCTAC-TGACGAGCTTCGTGGTGTTCCTTTTCCGATGTTTAAGGTTAAGTCTTTGAC  706

Query  653  TCTTGAGAC-TGTAATCTTC-CGGTATGTTATTCCTGGTATAGAAAGAGTGTTACAAAAC  710
            |||||| ||  |   || ||   |||||||||| ||||||||||||||||||||||||||
Sbjct  707  TCTTGACACAAG-GGTC-TCTAAGTATGTTATTTCTGGTATAGAAAGAGTGTTACAAAAC  764

Query  711  TCACCTGATTTAAA-ACAGCTAACAGTAC-ACGCA-AA-GAAT  749
            |||||||||||||| | |||||| | ||| || || || ||||
Sbjct  765  TCACCTGATTTAAAGA-AGCTAATATTACTACACACAAAGAAT  806



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 39182634660


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5