BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg923181
Length=1109
Score E
Sequences producing significant alignments: (Bits) Value
AT1G48470.1 | Symbols: GLN1;5 | glutamine synthetase 1;5 | chr1... 1788 0.0
AT5G16570.1 | Symbols: GLN1;4 | glutamine synthetase 1;4 | chr5... 617 5e-176
> AT1G48470.1 | Symbols: GLN1;5 | glutamine synthetase 1;5 | chr1:17913711-17916098
FORWARD LENGTH=1307
Length=1307
Score = 1788 bits (968), Expect = 0.0
Identities = 1050/1091 (96%), Gaps = 0/1091 (0%)
Strand=Plus/Plus
Query 2 TCTTCTTTCTCTTTTGGAACAGAAATGACGTCTCCACTCTCAGATCTCCTAAACCTCGAT 61
|||||||||||||| |||||| ||||||||||||| |||||||||||||||||||| |||
Sbjct 50 TCTTCTTTCTCTTTCGGAACAAAAATGACGTCTCCTCTCTCAGATCTCCTAAACCTTGAT 109
Query 62 CTCTCAGATACCAAGAAAATCATCGCTGAATACATATGGATTGGTGGCTCTGGAATGGAT 121
|| ||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 110 CTATCAGACACCAAGAAAATCATCGCTGAATACATATGGATCGGTGGCTCTGGAATGGAT 169
Query 122 ATTAGAAGCAAAGCCAGGACATTACCAGGACCAGTAAGTGATCCAACAAAGCTTCCAAAA 181
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 170 ATTAGAAGCAAAGCCAGGACATTACCAGGACCAGTAAGTAATCCAACAAAGCTTCCAAAA 229
Query 182 TGGAACTACGATGGATCTAGCACCGATCAAGCCGCTGGAGATGACAGTGAAGTCATTCTT 241
|||||||||||||||||||||||||||||||| || |||||||| |||||||||||||||
Sbjct 230 TGGAACTACGATGGATCTAGCACCGATCAAGCTGCCGGAGATGATAGTGAAGTCATTCTT 289
Query 242 TATCCTCAGGCAATATTCAAGGACCCATTCAGGAAGGGGAACAACATTCTGGTGATGTGT 301
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 290 TATCCTCAGGCAATATTTAAGGACCCATTCAGGAAGGGGAACAACATTCTGGTGATGTGT 349
Query 302 GATGCTTACACACCGGCCGGAGATCCAATTCCGACCAACAATAGGAACAAGGCCGTCAAA 361
|||||||||| |||||||||||||||||||||||||||||||||| |||||||||| |||
Sbjct 350 GATGCTTACAGACCGGCCGGAGATCCAATTCCGACCAACAATAGGCACAAGGCCGTAAAA 409
Query 362 ATCTTCGATCATCCCAATGTGAAAGCTGAAGAGCCTTGGTTTGGGATAGAGCAAGAATAC 421
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 410 ATCTTCGATCATCCCAATGTGAAGGCTGAAGAGCCTTGGTTTGGGATAGAGCAAGAATAC 469
Query 422 ACATTACTTAAAAAAGACGTGAAGTGGCCATTAGGTTGGCCTCTTGGTGGCTTTCCTGGT 481
||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||
Sbjct 470 ACATTACTTAAAAAAGATGTGAAGTGGCCACTAGGTTGGCCTCTTGGTGGCTTTCCTGGT 529
Query 482 CCTCAGGGTCCGTACTATTGTGCAGTTGGTGCAGACAAAGCCTTTGGTCGTGACATTGTC 541
|||||||| ||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 530 CCTCAGGGACCGTACTATTGTGCAGTAGGTGCAGACAAAGCTTTTGGTCGTGACATTGTC 589
Query 542 GATGCTCACTATAAAGCTTGTCTTTACTCCGGTTTGAGTATTGGTGGTGCCAATGGTGAA 601
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 590 GATGCTCACTATAAAGCTTGTCTATACTCCGGTTTGAGTATTGGTGGTGCCAATGGTGAA 649
Query 602 GTCATGCCTGGACAATGGGAGTTTCAAATCAGTCCTACTGTTGGTATTGGTGCCGGTGAT 661
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 650 GTCATGCCTGGACAATGGGAGTTTCAAATCAGTCCTACTGTTGGTATTGGTGCAGGTGAT 709
Query 662 CAATTATGGGTTGCTCGTTACATTCTTGAGAGGATCACTGAGATATGCGGTGTGATTGTC 721
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 710 CAATTATGGGTTGCTCGTTACATTCTTGAGAGGATTACTGAGATATGCGGTGTGATTGTC 769
Query 722 TCATTCGACCCAAAACCAATCCAGGGTGATTGGAATGGAGCAGCAGCTCATACGAACTTC 781
|||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 770 TCATTCGATCCAAAACCAATCCAGGGTGATTGGAATGGAGCAGCCGCTCATACGAACTTC 829
Query 782 AGTACAAAATCGATGAGGAAAGATGGAGGATTGGATTTGATTAAAGAAGCAATAAAGAAG 841
|||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||
Sbjct 830 AGTACAAAATCGATGAGGAAAGATGGAGGACTGGATTTGATTAAGGAAGCAATAAAGAAG 889
Query 842 CTTGAAGTGAAACACAAACAACACATTGCGGCTTATGGTGAAGGCAACGAGAGGCGTCTC 901
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 890 CTTGAAGTGAAACACAAACAACACATTGCTGCTTATGGTGAAGGCAACGAGAGGCGTCTC 949
Query 902 ACTGGGAAGCACGAAACCGCAGACATCAACACTTTCTCTTGGGGAGTCGCAAACCGTGGA 961
||||||||||| ||||| ||||||||||||||||||||||||||||| || | ||||||
Sbjct 950 ACTGGGAAGCATGAAACTGCAGACATCAACACTTTCTCTTGGGGAGTGGCGGATCGTGGA 1009
Query 962 GCATCCGTGAGGGTAGGAAGAGATACGGAGAAAGAAGGGAAAGGGTATTTTGAAGATCGA 1021
||||| ||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1010 GCATCGGTGAGAGTAGGAAGAGATACGGAGAAAGAAGGTAAAGGGTATTTTGAAGATCGA 1069
Query 1022 AGGCCTTCGTCTAATATGGACCCTTACTTAGTTACCTCCATGATTGCTGAAACCACCATC 1081
|||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||
Sbjct 1070 AGGCCTTCGTCTAATATGGATCCTTACCTAGTTACCTCCATGATTGCTGAAACCACCATC 1129
Query 1082 CTCTAAGGTTT 1092
||||||| |||
Sbjct 1130 CTCTAAGCTTT 1140
> AT5G16570.1 | Symbols: GLN1;4 | glutamine synthetase 1;4 | chr5:5421743-5424566
REVERSE LENGTH=1269
Length=1269
Score = 617 bits (334), Expect = 5e-176
Identities = 840/1080 (78%), Gaps = 51/1080 (5%)
Strand=Plus/Plus
Query 31 GTCTCCACTCT-CAGATCTCCTAAACCTCGATCTCTCAGATACCA-AGA--AAATCATCG 86
|||| |||| | ||||| | | || ||||||||||| ||| ||| || | |||||||
Sbjct 46 GTCTTCACT-TGCAGATTTAATCAATCTCGATCTCTCCGATTCCACTGACCAGATCATCG 104
Query 87 CTGAATACATATGGATTGGTGGCTCTGGAATGGATATTAGAAGCAAAGCCAGGACATTAC 146
| || ||||||||||||||||| || || ||||||| ||||||||||| ||||| || |
Sbjct 105 CCGAGTACATATGGATTGGTGGATCGGGCTTGGATATGAGAAGCAAAGCAAGGACTTTGC 164
Query 147 CAGGACCAGT-AAGTGATCCAACAAAGCTT-CCAAAATGGAACTACGATGGATCTAGCAC 204
| |||||||| | | |||||| | || || || |||||||||||||| || || |||||
Sbjct 165 CTGGACCAGTGACG-GATCCATCGCAG-TTACCGAAATGGAACTACGACGGTTCAAGCAC 222
Query 205 CGATCAAGC-CGCTGGAGATGACAGTGAAGTCATTC-TTTATCCTCAGGCAATATTCAAG 262
|| ||||| | | || |||||||||||||||| || | || ||||| || || |||||
Sbjct 223 CGGCCAAGCTC-CGGGCGATGACAGTGAAGTCA-TCATCTACCCTCAAGCTATCTTCAAA 280
Query 263 GACCCATTCAGGAAG-GGGAACAACATTCTGGTGATGTGTGATGCTTACACACCGGCCGG 321
||||| |||| |||| || |||||||| || ||||||||||| || || |||||||| ||
Sbjct 281 GACCCCTTCA-GAAGAGGCAACAACATCCTTGTGATGTGTGACGCATATACACCGGCAGG 339
Query 322 AGATCCAATTCCGACCAACAATAGGAACAAG-GCCGTC-AAAATCTTCGATCATCCC-AA 378
||| || |||||||| ||||| ||| || | | || | || ||||| || | ||| |
Sbjct 340 AGAGCCGATTCCGACGAACAAAAGG--CATGCGGCGGCTAAGATCTTTGAAGA-CCCTAG 396
Query 379 TG-TGAAAGCTGAAGAGCCTTGGTTTGGGATAGAGCAAGAATACACATTACTT-AAAAAA 436
|| || || ||||| | |||| || || || ||||| || || || || ||||
Sbjct 397 TGTTG-TCGCCGAAGAAACATGGTACGGAATTGAACAAGAGTATACCTT-GTTGCAAAAG 454
Query 437 GACGTGAAGTGGCCATTAGGTTGGCCTCTTGGTGGCTTT-CCTGGTCCTCAGGGTCCGTA 495
|| | |||||||| |||||||||| | || || ||| || ||||||||||| |||||
Sbjct 455 GATATTAAGTGGCCGGTAGGTTGGCCGGTCGGCGG-TTTCCCAGGTCCTCAGGGACCGTA 513
Query 496 CTATTGTGCAGTTGGTGCAGACAAAGCCTTTGGTCGTGACATTGTCGATGCTCACTATAA 555
||| |||| |||||| ||||||||||||||||| | ||||| || ||| |||| || ||
Sbjct 514 CTACTGTGGAGTTGGAGCAGACAAAGCCTTTGGAAGAGACATCGTTGATTCTCATTACAA 573
Query 556 AGCTTGTCTTTACTCCGGTTTGAGTATTGGTGGTG-CCAATGGTGAAGTCATGCCTGGAC 614
||||||||||||| |||| | | | | |||| | | || || ||||| |||||||| |
Sbjct 574 AGCTTGTCTTTACGCCGGAATCAATGTCAGTGG-GACTAACGGCGAAGTTATGCCTGGCC 632
Query 615 AATGGGAGTTTCAAATCAGTCCTACTGTTGGTATTGGTGCCGGTGATCAATTATGGGTTG 674
| |||||||| ||| || |||| || ||||| || | ||||| ||||| | |||||||
Sbjct 633 AGTGGGAGTTCCAAGTCGGTCCCACCGTTGGAATCGCTGCCGCCGATCAGGTCTGGGTTG 692
Query 675 CTCGTTACATTCTTGAGAGGATCACTGAGATATG-C-GGTGT-GAT-TGTCTCATTCGAC 730
||||||||||||||||||||||||| || || || | || || | | |||||| | |||
Sbjct 693 CTCGTTACATTCTTGAGAGGATCACAGA-AT-TGGCTGGAGTTGTTCTGTCTC-TA-GAC 748
Query 731 CCAAAACCAAT-CCAGGGTGATTGGAATGGAGCAGCAGCTCATACGAACTT-CAGTACAA 788
|| |||||||| || ||| ||||||||||| |||| || || || || || |||||| |
Sbjct 749 CCTAAACCAATTCC-GGGAGATTGGAATGGTGCAGGGGCACACACAAA-TTACAGTACGA 806
Query 789 AATCGATGAG-GAAAGATGGAGGATTGGATTTGATTAAAGAA-GCAATAAAGAAGCTTGA 846
| |||||||| ||| |||||||| | || |||| |||||| |||||| |||||||||
Sbjct 807 AGTCGATGAGAGAA-GATGGAGGGTACGAGGTGAT-AAAGAAAGCAATAGAGAAGCTTGG 864
Query 847 AGTGAAACACAAACAACACATTGCGGCTTATGGTGAAGGCAACGAGAGGCGTCTCACTGG 906
| || ||||| |||||||||| ||||||||||||||||||||| | |||||||| ||
Sbjct 865 ATTGCGTCACAAGGAACACATTGCTGCTTATGGTGAAGGCAACGAGCGTCGTCTCACCGG 924
Query 907 GAAGCACGAAACCGCAGACATCAACACTTTCTCT-TGGGGAGTCGCAAACCGTGGAGCAT 965
|| || |||||||| || ||||||||||||| | ||||| || ||||||||||| ||||
Sbjct 925 AAAACATGAAACCGCCGATATCAACACTTTCT-TATGGGGTGTGGCAAACCGTGGGGCAT 983
Query 966 CCG-TGAGGGTAGGAAGAGATACGGAGAAAGAAGGGAAAGGGTATTTTGAAGATCGAAGG 1024
| | | ||||| || | || || ||| | | || ||||| || ||||||||||| |||
Sbjct 984 C-GATTAGGGTTGGGCGTGACACTGAGCAGGCTGGAAAAGGATACTTTGAAGATCGTAGG 1042
Query 1025 CCTTCGTCTAATATGGACCCTTACT-TAGTTACCTCCATGATTGCTGAAACCACCATCCT 1083
|| | || || ||||| |||||| | || |||||||||||||||||| |||| |||||
Sbjct 1043 CCAGCTTCGAACATGGATCCTTACACT-GTGACCTCCATGATTGCTGAATCCACAATCCT 1101
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54367190235
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5