BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg923187
Length=628
Score E
Sequences producing significant alignments: (Bits) Value
AT4G33580.2 | Symbols: ATBCA5, BCA5 | beta carbonic anhydrase 5... 438 2e-122
AT2G17950.1 | Symbols: WUS, PGA6, WUS1 | Homeodomain-like super... 143 2e-33
> AT4G33580.2 | Symbols: ATBCA5, BCA5 | beta carbonic anhydrase
5 | chr4:16138360-16141624 FORWARD LENGTH=1361
Length=1361
Score = 438 bits (237), Expect = 2e-122
Identities = 337/380 (89%), Gaps = 27/380 (7%)
Strand=Plus/Plus
Query 1 AAGCTTCAAACTTGCAAGTGATGGCTTCAGGAAAGACACCTGGACTGACTCAGGAAGCTA 60
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 337 AAGCTACAAACTTGCAAGTGATGGCTTCAGGAAAGACACCTGGACTGACTCAGGAAGCTA 396
Query 61 ATGGGGTTGCAATTAATAGACAAAATGACAATGATGTATTTGACGACATGAAACAGCGGT 120
|||||||||||||| |||||||||| ||| |||||||||||||||||||||||||||||
Sbjct 397 ATGGGGTTGCAATTGATAGACAAAACAACACTGATGTATTTGACGACATGAAACAGCGGT 456
Query 121 TCCTCGCCTTCAAGAAG-----G---AT-----A--ACTTAGAACACTACAAAAATTTGG 165
|||| |||||||||||| | || | |||| ||||||||||||||| |||
Sbjct 457 TCCTGGCCTTCAAGAAGCTTAAGTACATCAGGGATGACTTTGAACACTACAAAAATCTGG 516
Query 166 CGGATGCTCAAGCTCCGAAGTGTAAGCAACAGTTTCTGGTGATCGCTTGTGCAGACTCTA 225
| |||||||||||| | ||| ||||||||||||| ||||||||||||||||
Sbjct 517 CAGATGCTCAAGCT-C----------CAA-AGTTTCTGGTGATTGCTTGTGCAGACTCTA 564
Query 226 GGGTTTGTCCTTCTACTGTCCTGGGATTCCAACCGGGTGATGCATTCACTGTTCGCAACA 285
| |||||||||||| ||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 565 GAGTTTGTCCTTCTGCTGTCCTGGGATTCCAACCGGGTGACGCATTCACTGTTCGTAACA 624
Query 286 TTGCAAATTTAGTACCTTCATATGAGTCGGGACCTACTGAAACCAAAGCTGCTCTAGAGT 345
||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||
Sbjct 625 TTGCAAATTTAGTACCTCCATATGAGTCTGGACCTACTGAAACCAAAGCTGCTCTAGAGT 684
Query 346 TCTCTGTGAATACTCTTAAT 365
||||||||||||||||||||
Sbjct 685 TCTCTGTGAATACTCTTAAT 704
> AT2G17950.1 | Symbols: WUS, PGA6, WUS1 | Homeodomain-like superfamily
protein | chr2:7808871-7810795 REVERSE LENGTH=1232
Length=1232
Score = 143 bits (77), Expect = 2e-33
Identities = 92/99 (93%), Gaps = 1/99 (1%)
Strand=Plus/Plus
Query 451 GCTTAT-TGGAACATCGACGTAGGCTTCCTCTCTTCCCTATGCACGGTGAAGATCACCTC 509
|||||| ||||||||||||||| |||||||||||||||||||||||||||||||||| ||
Sbjct 863 GCTTATCTGGAACATCGACGTACGCTTCCTCTCTTCCCTATGCACGGTGAAGATCACATC 922
Query 510 AATGGTGATAGCGGTGCTATCTGGAAGTATGGCCAATCG 548
|| |||| ||| ||||| |||||||||||||||||||||
Sbjct 923 AACGGTGGTAGTGGTGCCATCTGGAAGTATGGCCAATCG 961
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30291190641
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5