BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg923187 Length=628 Score E Sequences producing significant alignments: (Bits) Value AT4G33580.2 | Symbols: ATBCA5, BCA5 | beta carbonic anhydrase 5... 438 2e-122 AT2G17950.1 | Symbols: WUS, PGA6, WUS1 | Homeodomain-like super... 143 2e-33 > AT4G33580.2 | Symbols: ATBCA5, BCA5 | beta carbonic anhydrase 5 | chr4:16138360-16141624 FORWARD LENGTH=1361 Length=1361 Score = 438 bits (237), Expect = 2e-122 Identities = 337/380 (89%), Gaps = 27/380 (7%) Strand=Plus/Plus Query 1 AAGCTTCAAACTTGCAAGTGATGGCTTCAGGAAAGACACCTGGACTGACTCAGGAAGCTA 60 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 337 AAGCTACAAACTTGCAAGTGATGGCTTCAGGAAAGACACCTGGACTGACTCAGGAAGCTA 396 Query 61 ATGGGGTTGCAATTAATAGACAAAATGACAATGATGTATTTGACGACATGAAACAGCGGT 120 |||||||||||||| |||||||||| ||| ||||||||||||||||||||||||||||| Sbjct 397 ATGGGGTTGCAATTGATAGACAAAACAACACTGATGTATTTGACGACATGAAACAGCGGT 456 Query 121 TCCTCGCCTTCAAGAAG-----G---AT-----A--ACTTAGAACACTACAAAAATTTGG 165 |||| |||||||||||| | || | |||| ||||||||||||||| ||| Sbjct 457 TCCTGGCCTTCAAGAAGCTTAAGTACATCAGGGATGACTTTGAACACTACAAAAATCTGG 516 Query 166 CGGATGCTCAAGCTCCGAAGTGTAAGCAACAGTTTCTGGTGATCGCTTGTGCAGACTCTA 225 | |||||||||||| | ||| ||||||||||||| |||||||||||||||| Sbjct 517 CAGATGCTCAAGCT-C----------CAA-AGTTTCTGGTGATTGCTTGTGCAGACTCTA 564 Query 226 GGGTTTGTCCTTCTACTGTCCTGGGATTCCAACCGGGTGATGCATTCACTGTTCGCAACA 285 | |||||||||||| ||||||||||||||||||||||||| |||||||||||||| |||| Sbjct 565 GAGTTTGTCCTTCTGCTGTCCTGGGATTCCAACCGGGTGACGCATTCACTGTTCGTAACA 624 Query 286 TTGCAAATTTAGTACCTTCATATGAGTCGGGACCTACTGAAACCAAAGCTGCTCTAGAGT 345 ||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||| Sbjct 625 TTGCAAATTTAGTACCTCCATATGAGTCTGGACCTACTGAAACCAAAGCTGCTCTAGAGT 684 Query 346 TCTCTGTGAATACTCTTAAT 365 |||||||||||||||||||| Sbjct 685 TCTCTGTGAATACTCTTAAT 704 > AT2G17950.1 | Symbols: WUS, PGA6, WUS1 | Homeodomain-like superfamily protein | chr2:7808871-7810795 REVERSE LENGTH=1232 Length=1232 Score = 143 bits (77), Expect = 2e-33 Identities = 92/99 (93%), Gaps = 1/99 (1%) Strand=Plus/Plus Query 451 GCTTAT-TGGAACATCGACGTAGGCTTCCTCTCTTCCCTATGCACGGTGAAGATCACCTC 509 |||||| ||||||||||||||| |||||||||||||||||||||||||||||||||| || Sbjct 863 GCTTATCTGGAACATCGACGTACGCTTCCTCTCTTCCCTATGCACGGTGAAGATCACATC 922 Query 510 AATGGTGATAGCGGTGCTATCTGGAAGTATGGCCAATCG 548 || |||| ||| ||||| ||||||||||||||||||||| Sbjct 923 AACGGTGGTAGTGGTGCCATCTGGAAGTATGGCCAATCG 961 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 30291190641 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5