BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg923188
Length=824
Score E
Sequences producing significant alignments: (Bits) Value
AT1G48510.1 | Symbols: | Surfeit locus 1 cytochrome c oxidase ... 560 7e-159
> AT1G48510.1 | Symbols: | Surfeit locus 1 cytochrome c oxidase
biogenesis protein | chr1:17934889-17936915 FORWARD LENGTH=1419
Length=1419
Score = 560 bits (303), Expect = 7e-159
Identities = 396/437 (91%), Gaps = 21/437 (5%)
Strand=Plus/Plus
Query 1 TTGATCTCTCAAAGTCAGTACATGTCTTCTTCTACTACTAGCAATCT-CC--CTGC-T-- 54
||||| ||||||||||||||||||||||||||||||||||||||||| || |||| |
Sbjct 34 TTGATTTCTCAAAGTCAGTACATGTCTTCTTCTACTACTAGCAATCTCCCTGCTGCTTCA 93
Query 55 ---ACTTCCAATCTTGAGACCCAATTGCTTTCTTCAGTTCCACCACCCGCAAAGAAGAAA 111
|||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 94 CAAACTTCCAATCTTGAGAGCCAATTGCTTTCTTCAGCTCCACCACCCGCAAAGAAGAAA 153
Query 112 AGAGGGTCAGCGTTGTTATGGTACTTAGTTGGATTCACTACTTATGGTCTCGGTGAGACG 171
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 154 AGAGGGTCAGCGTTGTTATGGTACTTAGTTGGATTCACTACTTATGGTCTCGGTGAGACG 213
Query 172 TATAAGTTCCTACAAACAGATTTGTACAAGGAACATCTTGATTTC-AGACGACAATGCTT 230
|||||||||||||||||| | || |||||||||||| ||| ||| |||||||||
Sbjct 214 TATAAGTTCCTACAAACACA--AGT----GGAACATCTTGA-TTCTAGAAAACAATGCTT 266
Query 231 GGAAACGAAACCAATGAAGCTGAATACAATG-AAGAATGTGGATGAGTTAGGATTTCGAC 289
||||| ||||||||||||||||||||||| | ||| || |||||| ||||||||||||||
Sbjct 267 GGAAATGAAACCAATGAAGCTGAATACAACGAAAG-ATTTGGATGGGTTAGGATTTCGAC 325
Query 290 GGGTGGTATACAAAGGCGTTTACGATGAGCAAAGATCGATCTATGTAGGTCCAAAGCCTA 349
||||||||| ||||||| ||| |||||||||||||||||||||||| |||||||||||||
Sbjct 326 GGGTGGTATGCAAAGGCATTTTCGATGAGCAAAGATCGATCTATGTGGGTCCAAAGCCTA 385
Query 350 GATCCATGTCCAAAGGTTCTGAAGA-TGGCTTCTATGTCAGTACACCTCTTTTGCCAATC 408
|||||||||| ||| |||||||| | |||||| ||||||| |||||||||||||||||||
Sbjct 386 GATCCATGTCTAAAAGTTCTGAA-ATTGGCTTTTATGTCATTACACCTCTTTTGCCAATC 444
Query 409 CCTAATGAACCAAATAG 425
||||||||||| |||||
Sbjct 445 CCTAATGAACCTAATAG 461
Score = 309 bits (167), Expect = 3e-83
Identities = 250/288 (87%), Gaps = 14/288 (5%)
Strand=Plus/Plus
Query 547 TGTACCA-AGATTTTATGGCACTTGAGCTCTCTGACTTGCTTTATTAAGGCCTCATCGAT 605
|||| || || |||| ||||||| ||| || |||||||||||||||||||| || ||||
Sbjct 923 TGTA-CACAG-TTTTGTGGCACTGGAGTTCCCTGACTTGCTTTATTAAGGCGTCTTCGA- 979
Query 606 TTTTGATACGAA-ATTAACAAAATCTGTTCCTATTGGTATTGAGCCAATATTGATTCCAA 664
|||| || |||| |||||||||||||| |||||||||| | |||||||||||||||||||
Sbjct 980 TTTTAATGCGAAGATTAACAAAATCTGATCCTATTGGTGTAGAGCCAATATTGATTCCAA 1039
Query 665 TTTGTATTCTCGTTTATATATGTACCAAGATATACAGTCTTCGAAATTTATTTTGTAAAA 724
||| |||||||||| ||||||||||||||||||||||||||| || |||||||||||||
Sbjct 1040 TTTCCATTCTCGTTTTTATATGTACCAAGATATACAGTCTTCGTAACTTATTTTGTAAAA 1099
Query 725 TAGACACTATTGGTGTTGGATGTCTCACTAAACTCGAG-CTAGGAAAAG--A-----CAT 776
||||||||||||||||||| ||| ||||||||||||| | |||||||| | |||
Sbjct 1100 TAGACACTATTGGTGTTGGGTGTGTCACTAAACTCGACAC-AGGAAAAGTCAAATGACAT 1158
Query 777 GCCCAATGAAGTTCATAATGAAGGATGAATAAGTTTGAGATCGTGGTT 824
|||||||||||| ||||||||||| |||||||||| || |||| ||||
Sbjct 1159 GCCCAATGAAGTCCATAATGAAGGGTGAATAAGTTCGAAATCGCGGTT 1206
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40137083453
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5