BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg923188 Length=824 Score E Sequences producing significant alignments: (Bits) Value AT1G48510.1 | Symbols: | Surfeit locus 1 cytochrome c oxidase ... 560 7e-159 > AT1G48510.1 | Symbols: | Surfeit locus 1 cytochrome c oxidase biogenesis protein | chr1:17934889-17936915 FORWARD LENGTH=1419 Length=1419 Score = 560 bits (303), Expect = 7e-159 Identities = 396/437 (91%), Gaps = 21/437 (5%) Strand=Plus/Plus Query 1 TTGATCTCTCAAAGTCAGTACATGTCTTCTTCTACTACTAGCAATCT-CC--CTGC-T-- 54 ||||| ||||||||||||||||||||||||||||||||||||||||| || |||| | Sbjct 34 TTGATTTCTCAAAGTCAGTACATGTCTTCTTCTACTACTAGCAATCTCCCTGCTGCTTCA 93 Query 55 ---ACTTCCAATCTTGAGACCCAATTGCTTTCTTCAGTTCCACCACCCGCAAAGAAGAAA 111 |||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| Sbjct 94 CAAACTTCCAATCTTGAGAGCCAATTGCTTTCTTCAGCTCCACCACCCGCAAAGAAGAAA 153 Query 112 AGAGGGTCAGCGTTGTTATGGTACTTAGTTGGATTCACTACTTATGGTCTCGGTGAGACG 171 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 154 AGAGGGTCAGCGTTGTTATGGTACTTAGTTGGATTCACTACTTATGGTCTCGGTGAGACG 213 Query 172 TATAAGTTCCTACAAACAGATTTGTACAAGGAACATCTTGATTTC-AGACGACAATGCTT 230 |||||||||||||||||| | || |||||||||||| ||| ||| ||||||||| Sbjct 214 TATAAGTTCCTACAAACACA--AGT----GGAACATCTTGA-TTCTAGAAAACAATGCTT 266 Query 231 GGAAACGAAACCAATGAAGCTGAATACAATG-AAGAATGTGGATGAGTTAGGATTTCGAC 289 ||||| ||||||||||||||||||||||| | ||| || |||||| |||||||||||||| Sbjct 267 GGAAATGAAACCAATGAAGCTGAATACAACGAAAG-ATTTGGATGGGTTAGGATTTCGAC 325 Query 290 GGGTGGTATACAAAGGCGTTTACGATGAGCAAAGATCGATCTATGTAGGTCCAAAGCCTA 349 ||||||||| ||||||| ||| |||||||||||||||||||||||| ||||||||||||| Sbjct 326 GGGTGGTATGCAAAGGCATTTTCGATGAGCAAAGATCGATCTATGTGGGTCCAAAGCCTA 385 Query 350 GATCCATGTCCAAAGGTTCTGAAGA-TGGCTTCTATGTCAGTACACCTCTTTTGCCAATC 408 |||||||||| ||| |||||||| | |||||| ||||||| ||||||||||||||||||| Sbjct 386 GATCCATGTCTAAAAGTTCTGAA-ATTGGCTTTTATGTCATTACACCTCTTTTGCCAATC 444 Query 409 CCTAATGAACCAAATAG 425 ||||||||||| ||||| Sbjct 445 CCTAATGAACCTAATAG 461 Score = 309 bits (167), Expect = 3e-83 Identities = 250/288 (87%), Gaps = 14/288 (5%) Strand=Plus/Plus Query 547 TGTACCA-AGATTTTATGGCACTTGAGCTCTCTGACTTGCTTTATTAAGGCCTCATCGAT 605 |||| || || |||| ||||||| ||| || |||||||||||||||||||| || |||| Sbjct 923 TGTA-CACAG-TTTTGTGGCACTGGAGTTCCCTGACTTGCTTTATTAAGGCGTCTTCGA- 979 Query 606 TTTTGATACGAA-ATTAACAAAATCTGTTCCTATTGGTATTGAGCCAATATTGATTCCAA 664 |||| || |||| |||||||||||||| |||||||||| | ||||||||||||||||||| Sbjct 980 TTTTAATGCGAAGATTAACAAAATCTGATCCTATTGGTGTAGAGCCAATATTGATTCCAA 1039 Query 665 TTTGTATTCTCGTTTATATATGTACCAAGATATACAGTCTTCGAAATTTATTTTGTAAAA 724 ||| |||||||||| ||||||||||||||||||||||||||| || ||||||||||||| Sbjct 1040 TTTCCATTCTCGTTTTTATATGTACCAAGATATACAGTCTTCGTAACTTATTTTGTAAAA 1099 Query 725 TAGACACTATTGGTGTTGGATGTCTCACTAAACTCGAG-CTAGGAAAAG--A-----CAT 776 ||||||||||||||||||| ||| ||||||||||||| | |||||||| | ||| Sbjct 1100 TAGACACTATTGGTGTTGGGTGTGTCACTAAACTCGACAC-AGGAAAAGTCAAATGACAT 1158 Query 777 GCCCAATGAAGTTCATAATGAAGGATGAATAAGTTTGAGATCGTGGTT 824 |||||||||||| ||||||||||| |||||||||| || |||| |||| Sbjct 1159 GCCCAATGAAGTCCATAATGAAGGGTGAATAAGTTCGAAATCGCGGTT 1206 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 40137083453 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5