BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg923193
Length=1429
Score E
Sequences producing significant alignments: (Bits) Value
AT1G48580.1 | Symbols: | unknown protein; Has 91 Blast hits to... 1112 0.0
> AT1G48580.1 | Symbols: | unknown protein; Has 91 Blast hits
to 91 proteins in 40 species: Archae - 0; Bacteria - 0; Metazoa
- 49; Fungi - 0; Plants - 28; Viruses - 0; Other Eukaryotes
- 14 (source: NCBI BLink). | chr1:17958263-17960610 REVERSE
LENGTH=1505
Length=1505
Score = 1112 bits (602), Expect = 0.0
Identities = 700/748 (94%), Gaps = 4/748 (1%)
Strand=Plus/Plus
Query 21 ATGAATTCCCAAGCAGAAGTAGAGCAATGGGAAGCTCTTGATCTCGGCGATTCTGAACTC 80
||||| |||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGAACTCCCAAGCTGAAGTAGACCAATGGGAAGCTCTTGATCTCGGCGATTCTGAACTC 60
Query 81 CCGTCTTTTCTCCGCCCTTGCAATCGAAAATCTCCGTCGAGGTCTCTGCAACCGCCTGCG 140
|||||||||||||||||||| || || ||||||||| |||||||||||||||||| ||||
Sbjct 61 CCGTCTTTTCTCCGCCCTTGTAAACGCAAATCTCCGACGAGGTCTCTGCAACCGCATGCG 120
Query 141 CAACAACAGAATCCAAAGGCGGGTTTTAATAGTAACGCAAATCACCTTCAGACTCTTAGG 200
|||||||||||||||||||||||||||||||||||| | ||||||| || |||||| ||
Sbjct 121 CAACAACAGAATCCAAAGGCGGGTTTTAATAGTAACACTAATCACCGTCCCACTCTTCGG 180
Query 201 CGCTGCTCCTCGTCGGATCATTTTCTTGAAGACAGTTATTCCCGCTCCTTAATTCCAGGA 260
|||||||||||| ||||| | |||||||| || |||||||| |||||||| |||||||||
Sbjct 181 CGCTGCTCCTCGCCGGATAAGTTTCTTGAGGAGAGTTATTCTCGCTCCTTGATTCCAGGA 240
Query 261 CCTGCTGGAGTTTTTCAAGTTGCAATCCGCAGGAAGATGAATAAGGATCC-AAACTCGTT 319
|||||||||||| |||||||||||||||| || ||||||||||||||||| ||| |||||
Sbjct 241 CCTGCTGGAGTTGTTCAAGTTGCAATCCGTAGAAAGATGAATAAGGATCCTAAA-TCGTT 299
Query 320 CAATGAGCATGGAGAACCAATTCCAACTCAAGAGTTCCTACGGAAGGCTGTGGAAGAGCC 379
|||||||||||||||||||||||||||||||||||| |||| ||||| | ||||||||
Sbjct 300 TAATGAGCATGGAGAACCAATTCCAACTCAAGAGTTCTTACGTAAGGCAGCAGAAGAGCC 359
Query 380 TGATTGGGAAGACAAGGATTTCTCCGAGGACCCCTGGGTCTCTGCTGTTGATTACA-TCA 438
|||||||||||||||||||||||| |||||||||||||||||| |||||||||||| ||
Sbjct 360 TGATTGGGAAGACAAGGATTTCTCTGAGGACCCCTGGGTCTCTACTGTTGATTACATTC- 418
Query 439 GAAGTGAAGGTTTGTTGAGCAATGGTGGAAATGCTATAGGGACACCAGTGAGCGAGATTA 498
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 GAAGTGAAGGTTTGTTGAGCAATGGTGGAAATGCTATAGGGACACCAGTGAGCGAGATTA 478
Query 499 AGAGCAGATGTGACAGTTGGGGTAGAGTTGATCAGGTCGTGGCAATTGTCAAAACTTGCA 558
|||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 479 AGAGAAGATGTGACAGTTGGGGTAAAGTTGATCAGGTCGTGGCAATTGTCAAAACTTGCA 538
Query 559 CTCCAAATGGTCTAGGTGATGTCATGGTGACCCTTAAGGATCCCACTGGAACAATTGATG 618
|||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 539 CTCCGAATGGTCTAGGTGATGTCATGGTGACTCTTAAGGATCCCACTGGAACAATTGATG 598
Query 619 CCAGCGTGCACAGAAAAGTTATCTCCGAGAGTGAGTTTGGAAGAGATATACTAGTTGGTG 678
|||| ||||||||||||||||||||||||||||||||||| |||||||||| |||||| |
Sbjct 599 CCAGTGTGCACAGAAAAGTTATCTCCGAGAGTGAGTTTGGTAGAGATATACGAGTTGGCG 658
Query 679 CAGTGGTGATACTTAAGCAGGTAGCAGTCTGCGCACCTTCACGGTCGTCAACCTATCTTA 738
|||||||||||||||||||||| |||||||||||||| ||||| || |||||||||||||
Sbjct 659 CAGTGGTGATACTTAAGCAGGTTGCAGTCTGCGCACCCTCACGTTCATCAACCTATCTTA 718
Query 739 ACATAACACTGAAGAACATCTCCAAGGT 766
||||||||||||||||||||||||||||
Sbjct 719 ACATAACACTGAAGAACATCTCCAAGGT 746
Score = 728 bits (394), Expect = 0.0
Identities = 512/568 (90%), Gaps = 11/568 (2%)
Strand=Plus/Plus
Query 869 TTTACCTAAGCCGAATGATTCTGAAACGAGTGCCAAGAATCCCGTTCCTGTGAATGAAAA 928
|||||| |||| ||| |||||||||| ||||| |||||||| ||||| |||||||||||
Sbjct 825 TTTACCAAAGCAGAACGATTCTGAAATGAGTGGCAAGAATCTTGTTCCGGTGAATGAAAA 884
Query 929 CGAGGAATATTTGCGACTGCAACCCAAAGCCTTTACTGTGGAGCAAGGAACTACACAAGG 988
||||||||||||||||||||||||||| | |||| ||| |||||| | ||||| |||||
Sbjct 885 CGAGGAATATTTGCGACTGCAACCCAATGTGTTTAGTGTTGAGCAAAGCACTACTCAAGG 944
Query 989 AATCATGAACAATCTCAGACAAAATG-TGAAAGGAAGCAGTGAAGCACT-CAATGATGTA 1046
||||||||||||||||||||||||| | |||||||||||||||||||| | |||| ||
Sbjct 945 CATCATGAACAATCTCAGACAAAATGCT-AAAGGAAGCAGTGAAGCACTGC-ATGACATA 1002
Query 1047 GAAATGATAGACCTTAATCCAGCAGAGGGAAGCAACGT-CTGTCCAAAAAAGGGTGTGAC 1105
|||||| |||| ||||||| |||||||||||||| | || ||| ||||||||||||||
Sbjct 1003 GAAATGGTAGATATTAATCCTGCAGAGGGAAGCAA-ATCCTCTCCTAAAAAGGGTGTGAC 1061
Query 1106 AAAGAATCAGTGTGAAGTTAGAATGGAGCAGACTCTCTTGGGAAAACATGATTCAATCAG 1165
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1062 AAAGAATCACTGTGAAGTTAGAATGGAGCAGACTCTCTTGGGAAAACATGATTCAATCAG 1121
Query 1166 CCAACCAGAGCAGCAACTGTATGAAGATGTAGCTTCTGAGACTGATACAGCTGATGGCAT 1225
|||| |||||||||||||||| |||||||||||| |||||||||||| ||||||| ||||
Sbjct 1122 CCAAACAGAGCAGCAACTGTACGAAGATGTAGCTACTGAGACTGATATAGCTGATTGCAT 1181
Query 1226 TAGACCCGCGAAACAGATCAGAAGAAG-TCGTGAACCACACATTGATGAGCAAGAGAATA 1284
||||||||||||||||||||||||||| || | || | || |||||||||||||||| |
Sbjct 1182 TAGACCCGCGAAACAGATCAGAAGAAGTTC-TCAATCGCAGATTGATGAGCAAGAGAGTG 1240
Query 1285 TAATGGGGAA--C-GATGAAGTTACAACTCAAACTACGGTCCACAAATCTCAATCGATGG 1341
|||||||||| | |||||||| ||||||| |||||| |||||||||||||||||||||
Sbjct 1241 TAATGGGGAACCCTGATGAAGTCACAACTCGAACTACAATCCACAAATCTCAATCGATGG 1300
Query 1342 CGTCAACAATCGCGTTGCCACAGTGGACGGACGAGCAACTTGAAGAACTCTTTGCTTTTG 1401
||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1301 CGTCAACAATCTCGTTGCCACAATGGACGGACGAGCAACTTGAAGAACTCTTTGCTTTTG 1360
Query 1402 ACTGAAATAGACAGTTTGGATTTCTTTT 1429
||||||||||||||||||| ||||||||
Sbjct 1361 ACTGAAATAGACAGTTTGGCTTTCTTTT 1388
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70431364635
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5