BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg923194
Length=554
Score E
Sequences producing significant alignments: (Bits) Value
AT1G48590.2 | Symbols: | Calcium-dependent lipid-binding (CaLB... 821 0.0
AT3G17980.1 | Symbols: | Calcium-dependent lipid-binding (CaLB... 364 4e-100
> AT1G48590.2 | Symbols: | Calcium-dependent lipid-binding (CaLB
domain) family protein | chr1:17962839-17964429 FORWARD LENGTH=805
Length=805
Score = 821 bits (444), Expect = 0.0
Identities = 518/554 (94%), Gaps = 4/554 (1%)
Strand=Plus/Plus
Query 1 GAGAAGCATAAAGATCGGAGGATGAAACCCTCTTTAATGGATAGTCTACTAGGTCTCCTC 60
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 120 GAGAAGCATAAAGATCGGAGGATGAAACCTTCTTTAATGGATAGTCTACTAGGTCTCCTC 179
Query 61 CGTATTCGCATCAAACGCGGCGTCAATCTCGCAGTCCGCGATCTCAACAGTAGTGATCCT 120
|||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 180 CGTATTCGCATCAAACGCGGCGTCAACCTCGCAGTCCGTGATCTCAACAGTAGTGATCCT 239
Query 121 TACGTCGTCGTCAAAATGGGAAAACAGAAAATGAAGACTCGAGTTATTTACAAAGATGTA 180
||||| ||||||||||||| |||||||||| ||||||||||||||||||||||| |||||
Sbjct 240 TACGTTGTCGTCAAAATGGCAAAACAGAAATTGAAGACTCGAGTTATTTACAAAAATGTA 299
Query 181 AATCCTGAGTGGAATGAAGATTTAACTCTCTCAGTTTCAGATCCCAATCTTACCGTCCTC 240
|||||||||||||||||||| || ||||||||||||||||| ||||||||||||||||||
Sbjct 300 AATCCTGAGTGGAATGAAGACTTGACTCTCTCAGTTTCAGACCCCAATCTTACCGTCCTC 359
Query 241 TTGACGGTGTATGACTACGACACGTTCACCAAAGATGACAAGATGGGAGATGCAGAATTC 300
|||||||||||||| || ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 360 TTGACGGTGTATGATTATGACACGTTCACCAAAGACGACAAGATGGGAGATGCAGAATTC 419
Query 301 GTGATAAAGCCGTTTGTTAATGCATTGAAGATGCACTTACATGATCTCCCTTCTGGGACC 360
| ||| |||||||| |||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 420 GGGATTAAGCCGTTCGTTAATGCGTTGAAGATGCACTTACATGATCTCCCATCTGGGACC 479
Query 361 ATTGTGACCACGGTCCAGCCTAGCCGAGACAATTGCCTAGCCGAGGAGTCTCGGGTTATT 420
|| || |||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 480 ATCGTAACCACGGTCCAGCCTAGCCGCGACAACTGCCTAGCCGAGGAGTCTCGGGTTATA 539
Query 421 TGGTCTGACGGTAAGCTCGTTCAAGATATAGTTCTTAGACTAAGACATGTCGAGTGCGGT 480
|||||||| ||||||||||||||||||||||||||||| || ||||||||||| || |||
Sbjct 540 TGGTCTGATGGTAAGCTCGTTCAAGATATAGTTCTTAGGCTGAGACATGTCGAATGTGGT 599
Query 481 GAGGTTGAAGCTCAACTTCAATGGATTGATCTTCCCGGATCTAAGGGTCTATAATTTGTT 540
|||||||| |||||||||||||||||||||||||||||| |||||||||| |||||||
Sbjct 600 GAGGTTGAGGCTCAACTTCAATGGATTGATCTTCCCGGA---AAGGGTCTATGATTTGTT 656
Query 541 TTTCTCTGTTTTGG 554
|| || ||| ||||
Sbjct 657 TT-CTGTGTATTGG 669
> AT3G17980.1 | Symbols: | Calcium-dependent lipid-binding (CaLB
domain) family protein | chr3:6152121-6153434 FORWARD LENGTH=1072
Length=1072
Score = 364 bits (197), Expect = 4e-100
Identities = 392/485 (81%), Gaps = 18/485 (4%)
Strand=Plus/Plus
Query 70 ATCAAACGCGGCGTCAATCTCGCAGTCCGCGATC-TCAACAGTAGTGATCCTTACGTCGT 128
|||||||| ||||||||| | || ||||| || | ||| || || ||||||||||||||
Sbjct 289 ATCAAACGTGGCGTCAATTTAGCCGTCCGTGA-CATCAGTAGCAGCGATCCTTACGTCGT 347
Query 129 CGTCAAAATGGGAAAACAGAAAATGAAGACTCGAGTTATTTACAAAGATGTAAATCCTGA 188
|||||| ||||| ||||||||| |||||||||| || ||| |||||||||| ||||| ||
Sbjct 348 CGTCAAGATGGGCAAACAGAAATTGAAGACTCGTGTCATTAACAAAGATGTTAATCCAGA 407
Query 189 GTGGAATGAAGATTTAACTCTCTCAGTTTCAGATC-CCAATCTTACCGTCCTCTTGACGG 247
|||||||||||||| |||||||| || |||| | ||||||||||||||||||||||||
Sbjct 408 ATGGAATGAAGATTTGACTCTCTCCGTCACAGA-CTCCAATCTTACCGTCCTCTTGACGG 466
Query 248 TGTATGA-CTACGACACGTTCACCAAAGATGACAAGATGGGAGATGCAGAATTCGTGATA 306
||||||| | |||||| ||| | |||||| ||||||||||| ||||| || |||| ||||
Sbjct 467 TGTATGATC-ACGACATGTTTAGCAAAGACGACAAGATGGGCGATGCTGAGTTCGAGATA 525
Query 307 AAGCCGTTTGTTAATGCATTGAAGATGCA-CTTACATG-ATCTCCCTTCTGGGACCATTG 364
||||| | | || | || |||| |||||| || ||| | || ||| ||| |||||||
Sbjct 526 AAGCCCTATATTGAGGCTTTGAGGATGCAACTCG-ATGGA-CTTCCTAGTGGAACCATTG 583
Query 365 TGACCACGGTCCAGCCTAGCCGA-GACAATTGCCTAGCCGAGGAGTCTCGGGTTATTTGG 423
|||||||||| |||| || || | || || |||||||||||||| || || | |||
Sbjct 584 TGACCACGGTTAAGCCAAGTCGTCGT-AACTGTCTAGCCGAGGAGTCACGTGTCACCTGG 642
Query 424 -TCTGACGGTAAGCTCGTTCAAGATATAGTTCTTAGACTAAGACATGTCGAGTGCGGTGA 482
|| ||||| |||||||| || ||| | ||||| ||| | ||||||| || ||||| ||
Sbjct 643 GTC-GACGGCAAGCTCGTCCAGGATCTCGTTCTCAGATTGCGACATGTGGAATGCGGAGA 701
Query 483 GGTTGAAGCTCAACTTCAATGGATTGATCTTCCC-GGATCTAAGGGTCTAT-AATTTGTT 540
||| || ||||| |||||||||||||| || ||| || || |||||||||| ||| | ||
Sbjct 702 GGTCGAGGCTCAGCTTCAATGGATTGACCT-CCCTGGCTCCAAGGGTCTATGAATCT-TT 759
Query 541 TTTCT 545
|||||
Sbjct 760 TTTCT 764
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26573863763
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5