BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg923205

Length=993
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G23910.1 | Symbols:  | ATP binding microtubule motor family ...   364    7e-100
  AT3G17820.1 | Symbols: ATGSKB6, GLN1.3, GLN1;3 | glutamine synt...   117    2e-25 


> AT5G23910.1 | Symbols:  | ATP binding microtubule motor family 
protein | chr5:8068452-8072991 FORWARD LENGTH=2374
Length=2374

 Score =  364 bits (197),  Expect = 7e-100
 Identities = 346/412 (84%), Gaps = 33/412 (8%)
 Strand=Plus/Plus

Query  136  TCGAAAGATTCATATAAATTGGACTATTGCTACaaaaaaaaaCAGAATC-ACAGGTTCAA  194
            |||||||||||||||| ||||||||||||||||  || ||||  ||| | || |||||||
Sbjct  151  TCGAAAGATTCATATAGATTGGACTATTGCTAC-GAAGAAAA-TGAAACTACTGGTTCAA  208

Query  195  TTCT-ATCAAAGGAGATAAAGCCTCTTATCTCTACTGTCTTTGAGGGTAAAGATGCTAAT  253
            |||| | | |||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct  209  TTCTCA-CTAAGGAGATAAAGCCTCTTATATCTACTGTCTTTGAGGGTAAAGATGCGAAT  267

Query  254  GTCATCGCCCACGGAGCAAGAAATTGCGGAAAAACACATCTCATACATGTATTGAAAGCA  313
            |||||||||||||||||||||||| | || ||||||||||| ||||| |    |   | |
Sbjct  268  GTCATCGCCCACGGAGCAAGAAATAGTGGTAAAACACATCTGATACA-G----G---G-A  318

Query  314  ATCCCATTA-AGGGAGCTTGGTTTAACCGTTCTTACAATGTCTGAGATGCTATCCATGGC  372
            |    || | ||||| ||||||||| | || |||||||||||||||||| ||||||||||
Sbjct  319  A----ATGAGAGGGAACTTGGTTTAGCTGTCCTTACAATGTCTGAGATGTTATCCATGGC  374

Query  373  T---------GTA-TC-AG-TTTCTGTATCAGTTTACGAGGTTTCTCAGGAAACCGTGTA  420
            |         | |  |  | ||| |||||||||||||||||| ||||| ||||| |||||
Sbjct  375  TGAGGAAAGAGGAGACGCGATTTTTGTATCAGTTTACGAGGTGTCTCAAGAAACTGTGTA  434

Query  421  TAACCTTTTAGACCAAGAGAAGCGAGTGGTT-GCTGTACTGGAAGGTGCACAAGGGAAAA  479
            | |||| ||||||||||||||| |||||||| | |||| | |||||||||||||||||||
Sbjct  435  TGACCTGTTAGACCAAGAGAAGAGAGTGGTTAG-TGTATTAGAAGGTGCACAAGGGAAAA  493

Query  480  TTCAACTAAAGGGACTTCCTCAGGTACCTATGAAGTCACTCTCAGAATTCCA  531
            ||||||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct  494  TTCAACTAAAGGGACTTTCTCAGGTACCTGTGAAGTCACTCTCAGAATTCCA  545


 Score =  348 bits (188),  Expect = 7e-95
 Identities = 239/262 (91%), Gaps = 9/262 (3%)
 Strand=Plus/Plus

Query  530  CATAAAGGTGTGATGATACATGTTACCACTGGCAACGCCAATCCAGGCTCCCTTGGGAGG  589
            |||||||||||||||||||||||||| ||||| ||||||||| |||||||||||||||| 
Sbjct  607  CATAAAGGTGTGATGATACATGTTACTACTGGAAACGCCAATTCAGGCTCCCTTGGGAGA  666

Query  590  ATGAACTTTCTTGATATGGC--------A-GATTCCAGGAAACAAAACAGTGCTCTAGCT  640
            ||||||||||||||||||||        | |||||||||||||||||||||||| ||| |
Sbjct  667  ATGAACTTTCTTGATATGGCAGGATATGAGGATTCCAGGAAACAAAACAGTGCTTTAGGT  726

Query  641  CCTCTAGAGATTGCCAGAGTTAATACTTTGATATATGCTTTACAGAATGTCATGTATGCT  700
            |||||||||||||| ||||||||||  | |||||||||||||||||||||||||||||||
Sbjct  727  CCTCTAGAGATTGCTAGAGTTAATAAGTCGATATATGCTTTACAGAATGTCATGTATGCT  786

Query  701  CTCAACGGAAATGAATCCCATGTGCCATATCGGGAGAGCAAACTCACTCGAATGCTGAAA  760
            || |||| |||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct  787  CTAAACGCAAATGAATCCCATGTGCCATATCGGGAGAGCAAACTCACTCGTATGCTGAAA  846

Query  761  GATTGTTTAAAAGGATGCAACA  782
            |||||||||||||||| |||||
Sbjct  847  GATTGTTTAAAAGGATCCAACA  868


> AT3G17820.1 | Symbols: ATGSKB6, GLN1.3, GLN1;3 | glutamine synthetase 
1.3 | chr3:6097414-6099595 FORWARD LENGTH=1341
Length=1341

 Score =  117 bits (63),  Expect = 2e-25
 Identities = 99/116 (85%), Gaps = 3/116 (3%)
 Strand=Plus/Plus

Query  21   ACATGCAGGTTATGTGTGATCCTTATACACCAGCTGGTGTTCCAATTCCAACCAACAAGA  80
            |||| | ||| ||||||||| |||| ||||||||||||| ||| ||||||||||||||||
Sbjct  349  ACATCCTGGTGATGTGTGATGCTTACACACCAGCTGGTGATCCTATTCCAACCAACAAGA  408

Query  81   GGCACAACGCTGCTAAAATTTTCAGACACCC--ATCATTGCCTCCGAGGAGCCTTG  134
            |||||||||||||||| || ||||| |||||  | | |||||   |||||||||||
Sbjct  409  GGCACAACGCTGCTAAGATCTTCAGCCACCCCGA-CGTTGCCAAGGAGGAGCCTTG  463



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 48626654296


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5