BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg923226
Length=832
Score E
Sequences producing significant alignments: (Bits) Value
AT4G11950.1 | Symbols: | Protein of unknown function (DUF1191)... 769 0.0
> AT4G11950.1 | Symbols: | Protein of unknown function (DUF1191)
| chr4:7173276-7174259 REVERSE LENGTH=984
Length=984
Score = 769 bits (416), Expect = 0.0
Identities = 556/622 (89%), Gaps = 16/622 (3%)
Strand=Plus/Plus
Query 152 AACCGGTTATAATTACGGGCTCGTGTCTCCGGTTCTTGGTTTATTGGCTTACAATTCAAA 211
||||||||| || ||| |||| |||||||| |||||||||||||||||||||||||||||
Sbjct 363 AACCGGTTACAAATACCGGCTTGTGTCTCCTGTTCTTGGTTTATTGGCTTACAATTCAAA 422
Query 212 CCCGTATGGTGTGGCTGTGAATCCTTATGAGATTAACATAATAGGCACGGAACAAAACTC 271
||| | ||||| |||||||||||||||||| ||||| |||| ||||||||||||||| |
Sbjct 423 TCCGGACGGTGTTGCTGTGAATCCTTATGAGGTTAACGTAATGGGCACGGAACAAAACCC 482
Query 272 TATTTTGATCAAGTTCTTGAGTAGCGTGGCAAGTGGGAGCCCTAAACCTAACACGAAGAA 331
|||||||||||| ||||| || || | ||||||||| |||||||||||||||||||||||
Sbjct 483 TATTTTGATCAAATTCTTAAGCAGTGAGGCAAGTGGTAGCCCTAAACCTAACACGAAGAA 542
Query 332 GAACTCATCTCTCTTGTGTGCTTGCTTCACAAGTAACGGTAACATAACGTTTAGGGAGCA 391
|||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 543 GAACTCATCTGTCTTGTGTGCTTGCTTCACAAGTAACGGTAACATAACGTTTAGAGAGCA 602
Query 392 AGTTTCAGCCTCCGTTTTCTTGGGAACAAGACAAGGGCATTATGTGCTGGTGATTAGAGC 451
||||||||| | |||| |||||||||||||||||||||||| | ||| |||||||||||
Sbjct 603 AGTTTCAGCTTATGTTTGCTTGGGAACAAGACAAGGGCATTACGCGCTTGTGATTAGAGC 662
Query 452 TCATGATAGTAGTGGTCGTGGTAGTACGTTGGTAACGCCGCCGTCATCTCCGGCGGTGAA 511
|||||||||| | ||| | ||||||||| ||||||| ||| ||||||||||||| |||
Sbjct 663 TCATGATAGTGGCGGTGGCGGTAGTACGGTGGTAACACCGTCGTCATCTCCGGCTTTGAC 722
Query 512 TGACGGTGGCGGAGGGAAATTG-GC-GGT------TGG-G------AGTGTGATTGGGTC 556
|||||||||||||||||||||| || ||| ||| | |||||||| || ||
Sbjct 723 TGACGGTGGCGGAGGGAAATTGAGCCGGTGGAAAGTGGCGGTTGGGAGTGTGATAGGTTC 782
Query 557 AATGATTGGAGCGTTTCTGTTACGGTTATTGGTGGTGGCGATGGTAGTGAAAGGGAAGAA 616
||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 783 AATAATTGGAGCGTTTCTGTTAGGGTTATTGGTGGTGGCGATGGTAGTGAAAGGGAAGAA 842
Query 617 GAAAACTATgagagaggagatggagaggagagCTTATGAAGAAGAAGCACTTCCGGTTTC 676
|||| | |||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 843 GAAAGCGATGAGAGAGGAGATGGAGAGGAGAGCTTATGAAGAAGAAGCACTTCAGGTTTC 902
Query 677 AATGGTGGGTCATGTTAGAGCTAATCCTAATGCTTCAAGAACAAGAACGGTTCCAAGATT 736
|||||||||||||||||||||||||||||||||||| ||| |||||||| ||||||||||
Sbjct 903 AATGGTGGGTCATGTTAGAGCTAATCCTAATGCTTCGAGATCAAGAACGATTCCAAGATT 962
Query 737 TGACAATACTAGGTACA-GTAA 757
||| ||||||||||| | ||||
Sbjct 963 TGAAAATACTAGGTATAAGTAA 984
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40538956629
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5