BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg923232
Length=1348
Score E
Sequences producing significant alignments: (Bits) Value
AT1G48850.1 | Symbols: EMB1144 | chorismate synthase, putative ... 2241 0.0
> AT1G48850.1 | Symbols: EMB1144 | chorismate synthase, putative
/ 5-enolpyruvylshikimate-3-phosphate phospholyase, putative
| chr1:18064905-18068090 REVERSE LENGTH=1694
Length=1694
Score = 2241 bits (1213), Expect = 0.0
Identities = 1297/1338 (97%), Gaps = 3/1338 (0%)
Strand=Plus/Plus
Query 3 TGCCTTTGAATCCTGATCAT-G-G-CGTCTTCTCTTACTTCCAAATCCATTCTCGGATCC 59
|||||| ||||||||||||| | | |||||||||| ||||| ||||||||||||||||||
Sbjct 117 TGCCTTGGAATCCTGATCATGGCGTCGTCTTCTCTCACTTCGAAATCCATTCTCGGATCC 176
Query 60 ACCAAACCCGGttcttcttctcttccgtccgagctccgtcgtctctcctctcccgccgtt 119
||||||| |||||||||||||||||| || ||||||||||||||||| ||||||||||||
Sbjct 177 ACCAAACTCGGTTCTTCTTCTCTTCCCTCGGAGCTCCGTCGTCTCTCTTCTCCCGCCGTT 236
Query 120 cagatctctctccgtACCCAAACCAGGAAGAACTTACAGATACAAGCTACTGGAAGTTCT 179
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 237 CAGATCTCTCTCCGTACCCAAACCAGGAAGAACTTCCAGATACAAGCTACTGGAAGTTCA 296
Query 180 TATGGGACTCATTTTCGAGTTTCAACTTTTGGAGAATCACATGGAGGAGGAGTTGGTTGT 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 TATGGGACTCATTTTCGAGTTTCAACTTTTGGAGAATCACATGGAGGAGGAGTTGGTTGT 356
Query 240 ATCATTGATGGTTGTCCTCCTCGGATTCCACTTACTGAATCTGATTTGCAATTCGATCTC 299
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 357 ATCATTGATGGTTGTCCTCCTCGTATTCCACTTACTGAATCTGATTTGCAATTCGATCTC 416
Query 300 GATAGAAGGAGGCCTGGTCAGAGCAGGATCACAACTCCTAGAAAAGAGACTGATACTTGC 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 417 GATAGAAGGAGGCCTGGTCAGAGCAGGATCACAACTCCTAGAAAAGAGACTGATACTTGC 476
Query 360 CGGATATCTTCTGGAGTCTCCGAAGGAATGACGACAGGAACACCTATCCATGTGTTTGTG 419
|||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 477 CGGATATCGTCTGGAGTCTCTGAAGGAATGACGACAGGAACACCTATCCATGTGTTTGTA 536
Query 420 CCAAACACCGATCAGAGAGGACTTGATTACAGTGAAATGTCAGTTGCATATAGACCATCG 479
|||||||| |||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 537 CCAAACACAGATCAGAGAGGACTTGATTACAGTGAAATGTCGGTTGCCTATAGACCATCG 596
Query 480 CATGCTGATGCAACTTATGATATGAAGTATGGTGTCAGATCAGTGCAGGGTGGAGGAAGA 539
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 597 CATGCTGATGCAACTTATGACATGAAGTATGGTGTCAGATCAGTGCAGGGTGGAGGAAGA 656
Query 540 TCTTCAGCTAGAGAGACCATTGGAAGAGTTGCTCCTGGAGCTTTGGCCAAGAAAATTTTG 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 657 TCTTCAGCTAGAGAGACCATTGGAAGAGTTGCTCCTGGAGCTTTGGCCAAGAAAATTTTG 716
Query 600 AAGCAATTTGCAGGAACTGAGATTCTTGCCTATGTCTCGCAAGTCCACCACGTTGTACTT 659
|||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 717 AAGCAATTTGCAGGAACTGAGATTCTTGCCTATGTCTCGCAAGTTCACCATGTTGTACTT 776
Query 660 CCAGAAGATTTGGTAGACCACGACAATTTGACACTGGAACAGATAGAAAACAACATTGTT 719
|||||||| |||||||||||||| ||||| ||||| |||||||||||||| ||||||||
Sbjct 777 CCAGAAGAATTGGTAGACCACGAGAATTTAACACTCGAACAGATAGAAAATAACATTGTC 836
Query 720 AGATGCCCTAATCCCGAGTATGCAGAAAAGATGATAGCTGCGATTGATGCTGTCAGGACA 779
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 837 AGATGCCCTAATCCCGAGTATGCGGAAAAGATGATAGCTGCGATTGATGCTGTCAGGACA 896
Query 780 AAAGGGAACTCTGTTGGTGGTGTTGTGACCTGCATTGTTCGAAATGCTCCACGTGGGCTT 839
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 897 AAAGGGAACTCTGTTGGTGGTGTTGTGACCTGCATTGTTCGGAATGCTCCACGTGGGCTT 956
Query 840 GGTACACCGGTTTTCGATAAACTTGAAGCAGAACTGGCAAAAGCTTGTATGTCATTACCA 899
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 957 GGTACACCGGTTTTCGATAAACTTGAAGCAGAACTGGCAAAAGCTTGTATGTCGCTACCT 1016
Query 900 GCAACAAAGGGATTTGAGTTTGGAAGTGGCTTTGCAGGTACCTTTTTAACTGGTCTTGAA 959
||||| |||||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 1017 GCAACTAAGGGATTTGAGTTTGGAAGCGGCTTTGCAGGTACCTTTTTGACTGGTCTTGAA 1076
Query 960 CACAATGATGAGTTCTATACCGATGAAAATGGAAGAATACGTACCAGAACAAACCGATCT 1019
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1077 CACAATGATGAGTTCTATACCGATGAAAATGGAAGAATACGTACCAGAACCAACCGATCT 1136
Query 1020 GGTGGAATTCAGGGAGGGATCTCAAATGGTGAAATAATAAACATGAGAGTAGCCTTCAAG 1079
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1137 GGTGGAATTCAGGGAGGGATCTCAAATGGTGAAATAATAAACATGAGAGTAGCCTTCAAG 1196
Query 1080 CCAACATCAACAATTGGAAGGAAGCAGAATACGGTAACCAGAGACAAGGTAGAAACCGAA 1139
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1197 CCAACATCAACAATTGGAAGGAAGCAAAATACGGTAACCAGAGACAAGGTAGAAACCGAA 1256
Query 1140 ATGATTGCGCGTGGCCGTCATGATCCTTGTGTTGTTCCACGAGCTGTGCCAATGGTGGAA 1199
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1257 ATGATTGCGCGTGGTCGTCATGATCCTTGTGTTGTTCCACGAGCTGTGCCAATGGTGGAA 1316
Query 1200 GCAATGGTGGCTTTAGTTCTTGTGGATCAATTGATGGCGCAATACGCACAATGCCATTTG 1259
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1317 GCAATGGTGGCTCTAGTTCTTGTGGATCAATTGATGGCGCAATACGCACAATGCCATTTG 1376
Query 1260 TTTCCAATAAATCCAGAGTTGCAGGAACCTCTCCAGATAGAGCAGCCGCAAAATGCTACT 1319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1377 TTTCCAATAAATCCAGAGTTGCAGGAACCTCTCCAGATAGAGCAGCCGCAAAATGCTACT 1436
Query 1320 GCTTTGTAAGCAAAACTC 1337
|||||||||||||| |||
Sbjct 1437 GCTTTGTAAGCAAATCTC 1454
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66365120490
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5