BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg923244

Length=202
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G35970.1 | Symbols: APX5 | ascorbate peroxidase 5 | chr4:170...   265    1e-70


> AT4G35970.1 | Symbols: APX5 | ascorbate peroxidase 5 | chr4:17028606-17030293 
FORWARD LENGTH=973
Length=973

 Score =  265 bits (143),  Expect = 1e-70
 Identities = 147/149 (99%), Gaps = 0/149 (0%)
 Strand=Plus/Plus

Query  1    CCAGAAACTGTGCTCCCATTATGCTCCGTCTTGCATGGCATGATGCAGGAACCTATGATG  60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  122  CCAGAAACTGTGCTCCCATTATGCTCCGTCTTGCATGGCATGATGCAGGAACCTATGATG  181

Query  61   CCAAGAAGAAAACCGGAGGTCCCAATGGATCTATCAGGTTCAAGGAAGAGCTAAACCGTC  120
            |||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||
Sbjct  182  CCAAGAAGAAAACCGGAGGTGCCAATGGATCTATCAGATTCAAGGAAGAGCTAAACCGTC  241

Query  121  CACACAACAAAGGTTTGGAGAAGGCAGTC  149
            |||||||||||||||||||||||||||||
Sbjct  242  CACACAACAAAGGTTTGGAGAAGGCAGTC  270



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 9003941829


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5